BAC Information

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BAC

Clone NameMSMg01-124N14
Chromosome17 (Build37)
Map Location 26,377,179 - 26,377,502
singlet/doubletsinglet
Overlap geneItfg3
Upstream gene0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, LOC100042643
Downstream geneLuc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124N14.T7 (MSMg01no124_n14.b1)MSMg01-124N14.TJ (MSMg01no124_n14.g1)
ACCAG334098AG334099
length1,2051,303
length of high quality
(start - end)
325 (122 - 446)329 (127 - 455)
definitionCHROMAT_FILE: MSMg01no124_n14.b1 PHD_FILE: MSMg01no124_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:29 2005CHROMAT_FILE: MSMg01no124_n14.g1 PHD_FILE: MSMg01no124_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGCCTATGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTACCTAATAACCAGACCCTTTATGCTGACAGTTGGTGTGACTCATCTC
TGGAGTGCCCTTTACAGTACAATGTTCAGAGGTTGGGCATGTGGGAGAAG
TGTGCTAGCTCCTCACTGGTTATCTGTTGACTTTAGTCTTGGTAGTTAGT
TCACAGAGCTGGTGTTCTCTGCTTTTGTGAATGTATAGATATGTACATTA
TAAAAGTCTTTTAAAAAAAATGATAAAGCAGTCAGGCTTGGAGGCTCCAG
CCTATAATCTTATCATTGGGGAGGTAGAGATATGAGTTTGAGGTCAGTCT
CAGCTACATAGCAAACTGAAGGCTAGCCTGGGTTATGAGACCCTGTGTTT
TATAAAAACAAAAACCAGGAAACAACAAAAGAAGATAAGCATGGCCGGTT
TTGTTGCCCCCCCCCTTTAATTCCAGAGCTCGGGAGGCAGAGGCGAAAGA
TAAGTAAATTGAGCCAATGCTTTAAGCAAATGAATGCAAAATTAGTTATA
ATTTATCTTAATAGTTTCCCTACTAAATACAGGAATGAAAAGGAATAATA
CTGATTGATGGGGGAATTGCAGGAAATAAGTCTAATCTAGACTTCAGGGA
AAAGTTTATTCCTTGGGCTAATCAATAAGACCTACCTGAGGCTGTTTTTC
ATCCCAGCATCAGGTCTGTGTGTGCTGGGAAATTTTGTGTTTCAGTCAGG
GAACCATGACCTTAAAATTTGTTTCCCTTGGAAAACTGGCTGAGGCTCTG
CCCTTGTTTTGAGTTTGTGCTTTGTGAAGAGAGTCCATGGTGGTTCCCTT
GTAACCACTGAACACTAACTATCTTTGTCTCCTATCTGTTTGCTTCAACT
AGAAAACCGGTTGCTTGCCGGTTGGTTTTTTTAGGTGTCTCTCCTCAGCC
TCTCCTATTGGAATGCCTCTAGAGTATAGTAACCGTCCTGCAGGTGTGCC
CACCCCTCTGTGTTAAAGACTCCCTTGGTCCTTTCCTTGCCGCTTTTGTA
CCCTTGTTTTCCTGTTAACTGAACTGAACCCCGTCCTTTCCTTCCTCTCT
CTTATCTCTTTCTACTATTATTTTCTCTCTCTTCTTCACCACTCCCCTGT
TTCTTTCTTTTTTATCTCCTCACAAGGGGAGCTCCCACAACCCTTATTCG
GTGGG
GGATATTNNTNATTGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAACTTTTCAGCTGGGGAACG
AGAGTACCAGTGAGCCCTTAATTACGAGGTAAGTCTGATCTTGAACTTTC
TAAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGACAATAGCTTTAT
AAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGAAGCCCTTTTGTTC
CTTTTCACATGTTATCAAGTGATTAAGATAGGGCTGAAAATTCTAGAGGA
AATTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGCAA
AGAGAAAATATGGTACACCAAATAAGTATACAGGCCTTTCCAAGGGTCTT
GAACTTGATGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAC
AAGGTTTTTTTTCCCCCCCCCAACAGAAAAAAGATCTCTTATAGAAGAAA
GTGGTTAGTAGTTCTGAATCAGATGACAAGGCTATTAGGGCCTGGAAGGC
GCTCTCCCGAGCAGGTGAAGCCACTGGACCATAATGACAGAGGCAGGTCT
TTACAGCCTACTAGGTCTTATTGTCCACCCTATAGTTGTAGATCAAGATT
ATAAAGGTGAACTTCAGGCTCTCTGTTCTTGTCCTCAAGTTGTCTTTTCT
ATATCACAAGGGGACAAAATTAGCTTCACCTAATAATTTTGCCAATGCCA
ACATGGCTTGTTTTTTCTTCCTCTGGTATTCCTATAGTTGCTTGAGGTAT
TAATTCTACTTGTAAATGATTCTGCATTACTTAATTATTGCCTTTACATT
GGTGACAAATCTTTATTCTTCCTTCTCGTTAGTTGTAAACTCTTCTTGGT
CTTCTTGCCAATTCTAGTTTCTGTTTAATTGGAATGTCTCCGCTTCTCTT
CCTCCCCTTTTGATACTAAATCCCTTTTTTTACCTGTGTTTCATAATCTA
ATTCTCCTTCTATATAATCGTTCTTGCGCGATATACTATTGGATGCGATT
CTAAATCTCGGTTCTTATCTTCTCTATTGTGGTCTTAAGGGTTTATGCTT
GTTATTTCATTTTCATTTCTTTTTGATCATTCTCCCTCCTCTCGTGCTAT
TATACGCTTTCATCGGCTCTTTTTAATCTTTTTTCATAAACGTCTTCTTT
TTTATCGGCCCGTCTATATCTTTGTGGTTTTAAAACTCTCTTGTCTTCGT
ATCTCTCTTATCTTCTTATCTTATCTTTTCTATCACTTCGCTTNCTCCTG
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_n14.b1 MSMg01no124_n14.b1 CHROMAT_FILE:
MSMg01no124_n14.b1 PHD_FILE: MSMg01no124_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:29 2005
         (325 letters)



>mm_chr17_26377146_26377869
          Length = 724

 Score =  559 bits (289), Expect = e-164
 Identities = 316/329 (96%), Gaps = 9/329 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttcagaggttgggcatgtgggagaagtgtgctagctcctcactggttatctgttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atgttcagaggttgggcatgtgggagaagtgtgctagctcctcactggttatctgttgac 298

                                                                       
Query: 61  tttagtcttggtagttagttcacagagctggtgttctctgcttttgtgaatgtatagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tttagtcttggtagttagttcacagagctggtgttctctgcttttgtgaatgtatagata 238

                                                                       
Query: 121 tgtacattataaaagtcttttaaaaaaaatgataaagcagtcaggcttggaggctccagc 180
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 237 tgtacattataaaagtctttttaaaaaa-tgataaagcagtcaggcttggaggctccagc 179

                                                                       
Query: 181 ctataatcttatcattggggaggtagagatatgagtttgaggtcagtctcagctacatag 240
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctataatcttatctttgcggaggtagagatatgagtttgaggtcagtctcagctacatag 119

                                                                       
Query: 241 caaactgaaggctagcctgggttatgagaccctgtgtttt----ataaaaacaaaaacca 296
           ||||||||||||||||||||||||||||||||||||        | ||||||||||||||
Sbjct: 118 caaactgaaggctagcctgggttatgagaccctgtg----gaaaaaaaaaacaaaaacca 63

                                        
Query: 297 ggaaacaacaaaagaagataagcatggcc 325
           |||||||||||||||||||||||||||||
Sbjct: 62  ggaaacaacaaaagaagataagcatggcc 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 724
Length adjustment: 9
Effective length of query: 316
Effective length of database: 715
Effective search space:   225940
Effective search space used:   225940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)