Query= MSMg01no125_a02.b1 MSMg01no125_a02.b1 CHROMAT_FILE:
MSMg01no125_a02.b1 PHD_FILE: MSMg01no125_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:53 2005
(608 letters)
>mm_chr17_10893832_10894837
Length = 1006
Score = 1048 bits (542), Expect = 0.0
Identities = 587/604 (97%), Gaps = 8/604 (1%)
Strand = Plus / Plus
Query: 4 gaattctgtgccacgtgctgcatctgatacacacccctcagccactgcttcatggaacat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgtgccacgtgctgcatctgatacacacccctcagccactgcttcatggaacat 263
Query: 64 gcttcaggctagaggcttgcctctctcactcacccctgactctgtttggtttggggatct 123
|||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 264 gcttcaggctagaggc-tgcctctctcacttgtccctgcctctgtttggtttggggatct 322
Query: 124 gggtactggctggcactggctccctt--ggcaatgtcagccttataccctaacattctga 181
|||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct: 323 gggtactggctggcactggctcccttaa---aatgtcagccttatactctcacattctga 379
Query: 182 tattactgcagtgactattatgtatgaacttgattcaatgcctcttgctagaatacgaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tattactgcagtgactattatgtatgaacttgattcaatgcctcttgctagaatacgaaa 439
Query: 242 gaagaaccgacaaagtgtatttacatttgaaatgaaagtagaatcatttatttagtaagt 301
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaggaaccgacaaagtgtatttacatttgaaatgaaagtagaatcatttatttagtaagt 499
Query: 302 agatggccaaacttgctgtggagctgtgcattttattgttcatccactgaacagttttaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agatggccaaacttgctgtggagctgtgcattttattgttcatccactgaacagttttaa 559
Query: 362 ttatattcttgagttgtttcctattaatacttatgaataataatctcttttccaatatga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttatattcttgagttgtttcctattaatacttatgaataataatctcttttccaatatga 619
Query: 422 tagacaatttattctgctgtataaactgtctctcattagcctacctgtcaatgtgctcta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagacaatttattctgctgtataaactgtctctcattagcctacctgtcaatgtgctcta 679
Query: 482 tcgcatacatatagatctgcctccctaaatgttactacacttcttcagttttaaaaatca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcgcatacatatagatctgcctccctaaatgttactacacttcttcagttttaaaaatca 739
Query: 542 tttttgtaggtatctgaaatatacaaaacaaaaaacaaaaaa-aaacaacaacaatcaaa 600
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||
Sbjct: 740 tttttgtaggtatctgaaatatacaaaacaaaaaacaaaaaacaaa-aacaaaaaacaaa 798
Query: 601 aaaa 604
||||
Sbjct: 799 aaaa 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1006
Length adjustment: 10
Effective length of query: 598
Effective length of database: 996
Effective search space: 595608
Effective search space used: 595608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_a02.g1 MSMg01no125_a02.g1 CHROMAT_FILE:
MSMg01no125_a02.g1 PHD_FILE: MSMg01no125_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:53 2005
(615 letters)
>mm_chr17_11038985_11039999
Length = 1015
Score = 959 bits (496), Expect = 0.0
Identities = 511/522 (97%), Gaps = 10/522 (1%)
Strand = Plus / Minus
Query: 1 cacagttatcaatcctgaatcactaatatttatcatcctatcatttcttaaagacaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cacagttatcaatcctgaatcactaatatttatcatcctatcatttcttaaagacaaaaa 453
Query: 61 aatcattacctcctccaaaacctaatattaaaaggcaccactatcccttctctgatcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aatcattacctcctccaaaacctaatattaaaaggcaccactatcccttctctgatcaat 393
Query: 121 ctaacttgcatactttcaactcagtcagttataaaatgcttaaactgacagagaagctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctaacttgcatactttcaactcagtcagttataaaatgcttaaactgacagagaagctag 333
Query: 181 aaatattcctaataaacgattatgcaaataagtatgacaatgagttgacccaacagaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaatattcctaataaacgattatgcaaataagtatgacaatgagttgacccaacagaaaa 273
Query: 241 ggttcctgaaagttagacttcaggaaactgttcccccacatctaaacaaaataaagctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggttcctgaaagttagacttcaggaaactgttcccccacatctaaacaaaataaagctca 213
Query: 301 tggcatgatgcctgtgctgcacagtttctatcaactaaagttctataagctaaagttatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tggcatgatgcctgtgctgcacagtttctatcaactaaagttctataagctaaagttatc 153
Query: 361 tgagaggatggaacttcaattaaaaaaaaaagtctccgttaagattaggttgcttttgct 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 152 tgagaggatggaacttcaattaaaaaaaaaagtccccgttaagattaggttgcttttgct 93
Query: 421 tttgcttttcttcctctctctctctctctctctctctctctctctctctctctctctctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tttgcttttcttcctctctctctctctctctctctctctctctctctctctctctctctc 33
Query: 481 tctctctctctctttctttgtataaaggatgcttatttggga 522
|||| ||||||||||||||||||||||||||||
Sbjct: 32 tctc----------tctttgtataaaggatgcttatttggga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
