BAC Information

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BAC

Clone NameMSMg01-126K20
Chromosome17 (Build37)
Map Location 20,926,648 - 20,927,175
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3
Downstream geneV1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126K20.T7 (MSMg01no126_k20.b1)MSMg01-126K20.TJ (MSMg01no126_k20.g1)
ACCAG335429AG335430
length698692
length of high quality
(start - end)
530 (44 - 573)468 (79 - 546)
definitionCHROMAT_FILE: MSMg01no126_k20.b1 PHD_FILE: MSMg01no126_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:09 2005CHROMAT_FILE: MSMg01no126_k20.g1 PHD_FILE: MSMg01no126_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAATT
CTCAACTAAGGACATCCAATGACTGAGAAATACCAAAAGAAACCTTTAAA
GTCCCTAGTCATCAGGGAAATGCAAATTAAAACAAATCTGGGATTCTACC
TCACTCTAGTCAGAATGGTTAAGATCAAAACACAAGTGACCCCTCTCCAA
CGCACTCACACCTGGAGGCAGCCTGTTCTTCAGGAATTCCCACAGATGCA
GAGTCACAGGGGACATAGGCACCCCTACCCAGTCAGAGGCAGATAGTCCT
TCTGGCTTGCACCTGGCCCTGGTAGCAGAGCCTGTGCTCTGCCCTGCTTA
ACCCACTCACACCCAGAAGCAGCCTGTCCTCCAGGACTTCCGACAGATCC
AGAGTCACAGATGAACCCCCAAATGCCTCCCAAAGCCCGGCCTAACTGGG
ACCTTCAGTTACCCAGAAATAGAGGCAGCCTCATCCAAGCAGAGGCACAT
GATCCTTCTTGCACTCACAGGAGTCCTGGAGCAGAATCTGGGCTCTGGGT
CACCACCAAATCCACTGACATCCAGAGGCAGCATATCCCCCAGAACTTCT
TACAACCAGGATAATAGGATCACAGCCTCACAGGAGGGACAGTCCCCAGT
CAGAGAAAATATGGACAGCTAAAACCAGAGAAAAGTAGACTGAAACCA
NTTTCGATGATGTGCGAGGCCTGGGCGGCGCCTGGTTTTCAAAATAAGGT
GAACTATAGAAGGATTACAGAAATACCACAGACAGAAAAGAGCTTTAAGG
ATAGTCCCCAATCCATATTTTAGGGACCCATAGCTGGATATCTGCTACAT
ATGTTTAAGGGACATATTTTCAGCCTATGGTTGCTCTTTTGTTGGTGGTT
CAGTGTTGGAGAGTCCCCAAGGGTCCAGGTTATTTGACACTGTTGATCTT
CTTGTGTGGTTCCTATTCCCTTTGGGGCCTACAAACTTTTTCCTAACTCT
TCCATAGGAGTCCTCAATCTCCATTCAATGGTTTACTGTAGTTCTCTGCA
TCAATATAAGTCAGCTGCTGCGCGCAATCTCTCAGAAGACAGTTATGCTA
GGCTCCTGTCTGCACTCATAAAACAATAACAGTAATAGTGTCAGGGATTT
GTGCTTGCCCATGGGATGGATCTCTGGTTGAGCTGGTTATTACTTTGCCA
TTCCCTCAGTCTATGCTCCACTCCCCATCCATATATATGTATACATATAT
ATGGATGATCTTGCATCACACCTCTAGTATCTCCCCATTGCCCTCTCCCA
CCCAGTTTCATCCCTCATCCTACTGCTTATGGTTATTTTATTTCCCCCTT
TGAAGTAGGAATTAAGCTTCTTTATTTGAATCTTCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_k20.b1 MSMg01no126_k20.b1 CHROMAT_FILE:
MSMg01no126_k20.b1 PHD_FILE: MSMg01no126_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:09 2005
         (530 letters)



>mm_chr17_20926301_20927230
          Length = 930

 Score =  975 bits (504), Expect = 0.0
 Identities = 522/528 (98%), Gaps = 1/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   aattctcaactaagg-acatccaatgactgagaaataccaaaagaaacctttaaagtccc 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aattctcaactaaggaatatccaatgactgagaaataccaaaagaaacctttaaagtccc 816

                                                                       
Query: 63  tagtcatcagggaaatgcaaattaaaacaaatctgggattctacctcactctagtcagaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tagtcatcagggaaatgcaaattaaaacaaatctgggattctacctcactctagtcagaa 756

                                                                       
Query: 123 tggttaagatcaaaacacaagtgacccctctccaacgcactcacacctggaggcagcctg 182
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 755 tggttaagatcaaaacacaagtgacccctctccaacccactcacacctggaggcagcctg 696

                                                                       
Query: 183 ttcttcaggaattcccacagatgcagagtcacaggggacataggcacccctacccagtca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttcttcaggaattcccacagatgcagagtcacaggggacataggcacccctacccagtca 636

                                                                       
Query: 243 gaggcagatagtccttctggcttgcacctggccctggtagcagagcctgtgctctgccct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaggcagatagtccttctggcttgcacctggccctggtagcagagcctgtgctctgccct 576

                                                                       
Query: 303 gcttaacccactcacacccagaagcagcctgtcctccaggacttccgacagatccagagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gcttaacccactcacacccagaagcagcctgtcctccaggacttccgacagatccagagt 516

                                                                       
Query: 363 cacagatgaacccccaaatgcctcccaaagcccggcctaactgggaccttcagttaccca 422
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cacagatgaaaccccaaatgcctcccaaagcccggcctaactgggaccttcagttaccca 456

                                                                       
Query: 423 gaaatagaggcagcctcatccaagcagaggcacatgatccttcttgcactcacaggagtc 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 455 gaaatagaggcagcctcatccaagcagaggcacatgatccttcttgcactcacaggagcc 396

                                                           
Query: 483 ctggagcagaatctgggctctgggtcaccaccaaatccactgacatcc 530
           |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 395 ctggagcagaatctggactctgggtcaccaccaaatccactgacatcc 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)