BAC Information

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BAC

Clone NameMSMg01-127E15
Chromosome17 (Build37)
Map Location 15,166,004 - 15,166,339
singlet/doubletsinglet
Overlap gene9030025P20Rik, Tcte3
Upstream geneEG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127E15.T7 (MSMg01no127_e15.b1)MSMg01-127E15.TJ (MSMg01no127_e15.g1)
ACCAG335873AG335874
length835710
length of high quality
(start - end)
100 (42 - 141)336 (69 - 404)
definitionCHROMAT_FILE: MSMg01no127_e15.b1 PHD_FILE: MSMg01no127_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:59 2005CHROMAT_FILE: MSMg01no127_e15.g1 PHD_FILE: MSMg01no127_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACATCTTGCTCCAAAGGCAGCCTGGGAGGAGACTAGATTTCTTTTCTT
TTTTTCTTTTTCTTTTTTTTTGGGGGGGGGGTTCGAGACATGCCTCTACC
GTTCTAATGCGTATATCTTTAAAACTTACTAACCAGACCAGACATGTCCG
CGAAATCTTAACTACCCACTGCCTTTGTCACCGCACTAGCTCGCTACAAA
CAAGTTTACATATAACCAAGCCCTATATAGCATTATCTATCCTCCTACAT
ACTTTCCCGTTTTCCACCTTTTCTCTTTTCTTTTCTCTCCCCTTCCCATC
TTATTCGCTACAATTTCACCATATCTTAACGCACCGTAAACACAAAATCC
CCCTTTGTATGAAGATTTATTATGCATATCGATGTGTCCCCCCCTCTCCA
CAACATTCACCTCCTACTCCCGCAAACCGCATTACCGTTATTACCACTTG
CGTCGCCCGCTCGCGGTTGCCATTTTATGCCGCAACCATATTCTCTTTCT
TCACCATTAACACCGAATTACTTACCCAACCCCTACTTCAACATCCATTT
ACTAATCTTTCTTCCCTCCGCCTCCACCCCTTTTTCCCATTTACTATCCT
TCGACTATAACCCATCATTTCATCATTCTTATCTTTCGTCTACCTTGCCC
TTCCTTTTCCCATTTCACTTTCGCCCACTCGCTCCGCCCCCTTACTATAT
CAATATTTTACCACCAATTCTACTTTCTTCTTTCATAATATTTACAAACG
AACATATTGCATCCGTCAACTCATTTCCATTCCTT
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGAGTGACTGATAGGCTTATTTCCTGCCCCT
TTCTACATGTAATCCCCTGTCTGAGGTGGAAGGTGGCCTATAGGGGTTAG
CCTGTTGTCTTCTCTGAATAAAGTGCAACTTAAAGATTCAATTCCTGTCT
ATTCATGTCTCTGCCTGAATAGCATGAGCCCTGCTATTTAGTCATAGTAA
CACCACCTGTAACTTTCCTGCTCTTCAGTGCATGGATTTCATGTGCTGCA
GTTCCGCATGGACGTAGGACCTCCTCTGTCTGTAACTCTGAGCTCAGCAC
CCATCTGCCTGTCTATCACAGTCAGGGTTACTATTGTTGTGATGAAACTT
CATGACCCCCACCGACTTGAATACGACAGGGTTTGTTTGGCTTGCACATC
CTGAATCACAGGTCCACTCAGAGAAACTGCAGCAAGAAAGCAAACTAAAC
AGGAACCTGGAGGCAGGGCCTGACACATATGCCATGGGGTCAATGCTTAC
CAGCCTGATCAGCACCCAGGAATCACCAGTCCAGGAATGTTATCATCCAC
AATGTGCTGGAGTCTCCCGAGTTAATCACTAATTAACAAAGTGCCCTATA
TGTCCTGCCTACAGCCCATTTTTATGAAGGCAACTTTTCAGTCGAGTTCC
CCTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_e15.g1 MSMg01no127_e15.g1 CHROMAT_FILE:
MSMg01no127_e15.g1 PHD_FILE: MSMg01no127_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:59 2005
         (336 letters)



>mm_chr17_15165804_15166539
          Length = 736

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/336 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagtgactgataggcttatttcctgcccctttctacatgtaatcccctgtctgaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 tggagtgactgataggcttatttcctgcccctttctacatgtaatctgctgtctgaggtg 260

                                                                       
Query: 61  gaaggtggcctataggggttagcctgttgtcttctctgaataaagtgcaacttaaagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggtggcctataggggttagcctgttgtcttctctgaataaagtgcaacttaaagatt 320

                                                                       
Query: 121 caattcctgtctattcatgtctctgcctgaatagcatgagccctgctatttagtcatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 caattcctgtctattcatgtctctgcctgaatagcatgagccctgctatttagccatagt 380

                                                                       
Query: 181 aacaccacctgtaactttcctgctcttcagtgcatggatttcatgtgctgcagttccgca 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaccacctgtaactttcctactcttcagtgcatggatttcatgtgctgcagttccgca 440

                                                                       
Query: 241 tggacgtaggacctcctctgtctgtaactctgagctcagcacccatctgcctgtctatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggacgtaggacctcctctgtctgtaactctgagctcagcacccatctgcctgtctatca 500

                                               
Query: 301 cagtcagggttactattgttgtgatgaaacttcatg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtcagggttactattgttgtgatgaaacttcatg 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)