BAC Information

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BAC

Clone NameMSMg01-127K04
Chromosome17 (Build37)
Map Location 28,868,695 - 28,869,355
singlet/doubletsinglet
Overlap geneMapk14
Upstream geneLOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, LOC100043318
Downstream geneMapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127K04.T7 (MSMg01no127_k04.b1)MSMg01-127K04.TJ (MSMg01no127_k04.g1)
ACCAG336120AG336121
length708715
length of high quality
(start - end)
665 (44 - 708)144 (76 - 219)
definitionCHROMAT_FILE: MSMg01no127_k04.b1 PHD_FILE: MSMg01no127_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:27 2005CHROMAT_FILE: MSMg01no127_k04.g1 PHD_FILE: MSMg01no127_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTGATACGCATAGCCGACCAGGCTTCTAGAGAAGAGCTTTGTTCT
TTACACAACCACTAGAACACCAACCACTCTAATTAAGCTGGATGGAAGGG
TTTTCTAAGTCACAGCACAGTCATCAGTGGCAACGACTGTCCAACAACAT
GAACCTAATTGATACTGATAGGTTATAAACTTTAAAATTGTAGAGGTTAA
GTCAATCAATCATCAAGTTACATTAACCACACGGGCTCCTCAACTATGAG
CCATACACAGGACAGCACACACCTAACAGATCTATGATGCCTCAAAAAGT
CTTATTAGGCAGCTCTTAGAAGCTAAGATCACTAGTTCAAAGGCACAATG
ACTAAAAGTGAGGCAAACAGAAACCCATGGAGAAAATTGAACTCCACGAA
AGAGCAGTCTGCAAAATGTCTCATCAGTGTTCCATTTACAAACCACACAG
GCTACAGCCTCAGGCCTTCTAGGCTGGCTGGAGTGGGGTCCGTATGTTCT
TTAGAGGCGTTGAAAAGAGTTCTAGAAACCACAGGACAGAGTAGTGAAGA
GAACTTTAGAACTCCTTGGGACCTTAAGAAAAATGGATAGGCCCACTAGA
CTAATGATTTCCAGTTCACCCAGTTAAAACTAAACGCACACAGGTAAACT
CCTACTTT
CTCGATATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTTTAAAAATTATCTATTTAAG
GACAGAGAGACGTTCAGTGGTTTAGAGCACTTGCCACTCTTGTTGGTTTT
GGACTCACAACCCAAACTTCTTTAAACTCCAGTTCTAGGGGATCTGATGC
CCTGTTCTGGCCTCCTCAGTACACAGAGATACACCATACACACATCCAAA
TTCTATGAACACATGTAACTGCGAGTACATGTCGGCATGCCCAGGGAGGT
GCGAGGGATGCTAATACTCTGGATATGATGCTGCCGGCACTTGCGGCTTG
TCCACTGCGGTTGCTGTGAATCAAATTCTGCGCCTCTGCACCCAATAACT
GTTCTTCACTGTAGATTCTCCCCCCCATGATCTGACCTATGTCCCCATAC
TGTTACACTCCTACCATTCCTATTCATAGTCCTAGTCTCAATTGCACATC
TCTCCCTGCTCCTGCCTCTGTCACGTCGCGTCTTCAACGTCTGTCCCTTC
TCCTTTCTATCCCTCCCGTTTTTTCCTCATGCTTCCCCGTTACTCTTTTA
ACCCCCTCTCCTTTCCCTTCACATCATTTTTTTCTGTCCCTTTTCCCTTT
ATTTCATTTTCCCCTGCTTTTCAATATAACCAGATATTTTTTCCTTTTCC
CACTACCAATTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_k04.b1 MSMg01no127_k04.b1 CHROMAT_FILE:
MSMg01no127_k04.b1 PHD_FILE: MSMg01no127_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:27 2005
         (665 letters)



>mm_chr17_28868491_28869555
          Length = 1065

 Score = 1239 bits (641), Expect = 0.0
 Identities = 656/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttgatacgcatagccgaccaggcttctagagaagagctttgttctttacaca 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattcacttgatacttatagccgaccaggcttctagagaagagctttgttctttacaca 806

                                                                       
Query: 65  accactagaacaccaaccactctaattaagctggatggaagggttttctaagtcacagca 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 805 accactagaacaccaaccactcttattaagctggatggaagggttttctaagtcacagca 746

                                                                       
Query: 125 cagtcatcagtggcaacgactgtccaacaacatgaacctaattgatactgataggttata 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 cagtcatcagtggcaacgactgtccaacaccatgaacctaattgatactgataggttata 686

                                                                       
Query: 185 aactttaaaattgtagaggttaagtcaatcaatcatcaagttacattaaccacacgggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aactttaaaattgtagaggttaagtcaatcaatcatcaagttacattaaccacacgggct 626

                                                                       
Query: 245 cctcaactatgagccatacacaggacagcacacacctaacagatctatgatgcctcaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctcaactatgagccatacacaggacagcacacacctaacagatctatgatgcctcaaaa 566

                                                                       
Query: 305 agtcttattaggcagctcttagaagctaagatcactagttcaaaggcacaatgactaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtcttattaggcagctcttagaagctaagatcactagttcaaaggcacaatgactaaaa 506

                                                                       
Query: 365 gtgaggcaaacagaaacccatggagaaaattgaactccacgaaagagcagtctgcaaaat 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgaggtaaacagaaacccatggagaaaattgaactccacgaaagagcagtctgcaaaat 446

                                                                       
Query: 425 gtctcatcagtgttccatttacaaaccacacaggctacagcctcaggccttctaggctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtctcatcagtgttccatttacaaaccacacaggctacagcctcaggccttctaggctgg 386

                                                                       
Query: 485 ctggagtggggtccgtatgttctttagaggcgttgaaaagagttctagaaaccacaggac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggagtggggtccgtatgttctttagaggcgttgaaaagagttctagaaaccacaggac 326

                                                                       
Query: 545 agagtagtgaagagaactttagaactccttgggaccttaagaaaaatggataggcccact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagtagtgaagagaactttagaactccttgggaccttaagaaaaatggataggcccact 266

                                                                       
Query: 605 agactaatgatttccagttcacccagttaaaactaaacgcacacaggtaaactcctactt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agactaatgatttccagttcacccagttaaaactaaacgcacacaggtaaactcctactt 206

            
Query: 665 t 665
           |
Sbjct: 205 t 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)