BAC Information

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BAC

Clone NameMSMg01-127O06
Chromosome17 (Build37)
Map Location 70,373,287 - 70,373,563
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
Downstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127O06.T7 (MSMg01no127_o06.b1)MSMg01-127O06.TJ (MSMg01no127_o06.g1)
ACCAG336305AG336306
length719708
length of high quality
(start - end)
237 (125 - 361)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no127_o06.b1 PHD_FILE: MSMg01no127_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:48 2005CHROMAT_FILE: MSMg01no127_o06.g1 PHD_FILE: MSMg01no127_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGTACCAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTC
AACATCCTTAATCATCTGGCACCTGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGACCACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCATAA
AACTGGATATAGTACTACCTGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGCAAGAATGACACATGCTCCACTATGT
TCATAGCAGCCTCCCCCCCAATATCCAGAAGCTGGAATGAACCCATATGC
CCCTCAATATAGGAATGTTTACTGAAGATGTGTTACATCTACTCAATGGA
GTACTACTCAGCTATTATTAAGATCGATTTTATGATATTCCTGGCCAAAT
GTATGCACCTGCATTGCATCATCCTGAGTGATGCCTTACATTCTTTATGG
AATTCATTCTATATGCACTCACTGATACGTGGATATTACTCTATCACTCT
TTCCACACCCACGATTTCATTACACAATTTCCTTCACCCTCGCTATCTCA
CCAATATCGACGACTGATG
CTTCGATGCTAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGTTGAGTCCCCTGCTTTTCTC
CAGGGGCACAGTGACAAAGACTTTAATCAAGCATTTTTGTATTATTAGAA
GCATTACTACCTACTTTTCTTAACAAAAAGTTAAGAACTACAGTTAAAGT
GGAAAAGATATTTGTGTTTAGTGACTGGTCTGCAAGATATGCCACTCTGA
AATTGCCTAGAATTGTTCTGTTCTGCACAAACTGTTAGTTACCTCTGAGT
GAGACAAGCGGCTGACATCTATTAACTTAGCAGTATTACAGAAAATATGC
TGACGGTGATGGAAAATTATTCTGGCGCAGTTAAAAGGTAAGGAGGCACT
CCACATACATTGTTAATTCCCCCTCTTCTTTCCTCTGCCATGTCCATTTT
CTGCGTATCTATCACGCCACATGTAACTACATACCTCTCCCCTCTCTACC
TCCTTTTGCCTTTATCCACTCCACGACCCTCCTTCTTTCCCTTCTTCTTT
CTTTCCCTCCCTTTTTACCCCCATACTTCCACTTACTTCATTTTTCCCCA
CCCCCTTTCCCTTCACCTTCTTATTTCCTTCCCTTTTCCCTTTATTTATT
TTTCCCCTTCTTTTCCTTTTACCCTTCGTTCTTGCCTCTTTACACTCCCC
CCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_o06.g1 MSMg01no127_o06.g1 CHROMAT_FILE:
MSMg01no127_o06.g1 PHD_FILE: MSMg01no127_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:48 2005
         (277 letters)



>mm_chr17_70373087_70373763
          Length = 677

 Score =  497 bits (257), Expect = e-145
 Identities = 272/277 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttgagtcccctgcttttctccaggggcacagtgacaaagactttaatcaagcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 477 catgttgagtcccctgcttttctccaggggcacagtgacaaagacttcaatcaagcattt 418

                                                                       
Query: 61  ttgtattattagaagcattactacctacttttcttaacaaaaagttaagaactacagtta 120
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 417 ttgtattattagaagcattattacccacttttcttaacaaaaagttaagaactacagtta 358

                                                                       
Query: 121 aagtggaaaagatatttgtgtttagtgactggtctgcaagatatgccactctgaaattgc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 357 aagtggaaaagatatttgtgtttagtgactgggctgcaagatatgccactctgaaattgc 298

                                                                       
Query: 181 ctagaattgttctgttctgcacaaactgttagttacctctgagtgagacaagcggctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 297 ctagaattgttctgttctgcacaaactgttagttacctctgagtgagacaagcgggtgac 238

                                                
Query: 241 atctattaacttagcagtattacagaaaatatgctga 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 atctattaacttagcagtattacagaaaatatgctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)