BAC Information

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BAC

Clone NameMSMg01-128C17
Chromosome17 (Build37)
Map Location 52,100,953 - 52,101,238
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128C17.T7 (MSMg01no128_c17.b1)MSMg01-128C17.TJ (MSMg01no128_c17.g1)
ACCAG336512AG336513
length719840
length of high quality
(start - end)
286 (127 - 412)---
definitionCHROMAT_FILE: MSMg01no128_c17.b1 PHD_FILE: MSMg01no128_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:10 2005CHROMAT_FILE: MSMg01no128_c17.g1 PHD_FILE: MSMg01no128_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCA
CCATTTCTTCCCAACCTACCATGAATCCTTCAGCAATTCAAAAATGGATT
CTGCAACCACTGATTTCCTCCGTAAGTCTGGCCATCCCAATTTTCTTGAG
GCATGAGTTCTTGTCATGGAAAGATACATTTATGCATGACTATAGGAGTT
TCAGACCTTAAGTTGCCCCTCTGATTAAACAAAGGTGGAGGCACAGAGAT
GGCCAGTGACAATAGCAAGCTCTTCCCTGGGGGCACCAAGACACTACCCA
CTGGAGAACACTGCCATCCCTTCCTCATTAGCATGGTCATATTTCAAATG
AGGATATGCTGTAAGGAGAGAACAATACATACGGGTTCGTTAGTCTTGCT
CTTTTAAAGATACACGCTGTACGTGGGATAAATGCTGTGAGCAAGAAATT
ATAAGTAGGTTCCCATATGCTAGATATCTATTTCCATATCTCCTATCATC
ATGGTTTCTGGGCACTTTGACTGAGGGATGAGGCTAATTCAGGCAATGAA
TTACACTCAGGGAAGTAGGTGAAAATTCTTGTCTCTTTAACTCTTTACCA
CATACAGTTAGGATTCATTGGAAAGTAAGGAGACTCTAAGATTTTTCTAG
ACTATAAACCTTGGAGAAAGCGTAAAAGTTCAATATTGTGGTACCTAGCA
ATATTATTATTTGCTCACC
NTGGTAGGCCTGNCGNCCGCCTGNCTTCCCAATTTAGGTGAACTATANAA
NGATTCGCGNAATTCCAAGCANCTATGCAAGGCTCTTTATGNATGNGCTG
NNAATCCATTTTAACCCTTCACGCATGTGCCACCANCTCATGAACAACTG
CAACATCTCCCTTGTCTCCTCGAAAATATCTCTTTATTTATATTCTAANA
ATGCTCTTATTTAAATTTATTTGTTGGTGCTCGGGAGGGGGGGAGGGTGG
TGTGTGTGTTTAGCAGAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGA
AAAGAAAAGGAGAGGGGGGGGGTTTTTATTTATTTCTTNNNNNNNNNNCC
CCNNCNTTNNNNTTTTTTTTTTTTTCTTTCCCTTTTTTCTTTTTTATTTT
TTTTTTATTTATCCTTAACAAAAAAAAATAAAAAAAAAAAAAAAAAAAAC
NCCTTTTTTTTCTCCCCTCCNCNNTNCCCCCCCCCTTTTTTCCCCTTCCT
CCTCTTTATCCCCTTTTATCTACTTTCATNTTTCTCCCNTCCTTCCCCTT
TTCCCTTTTTTTTTTCTCCCCCTTTTATAAAAAAAATTTTTTTTTTTTTT
CCCCCCATTTTTTCCCCTTTTTTTTTTTCCTCCTTTTTCTTCAACCCTTT
CCCTCTCCTTCCCCCCTTTTTCCCCTTCTTTTTTCTCCCTTTTTCCTTAC
CCCCCTTTTTTTTACCACTTTTTCTTTTCTTCCCCTCCTTTTTTTTCCTC
CATCTCCATTTTTACTTTACCCCACACCCCCCCTATCTTTTCCTTTCCCT
CATCCTCCTCTCACTTATTTTTTTTTATTTTTTTACATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_c17.b1 MSMg01no128_c17.b1 CHROMAT_FILE:
MSMg01no128_c17.b1 PHD_FILE: MSMg01no128_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:10 2005
         (286 letters)



>mm_chr17_52100753_52101438
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggccatcccaattttcttgaggcatgagttcttgtcatggaaagatacatttatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctggccatcccaattttcttgaggcatgagttcttgtcatggaaagatacatttatgca 427

                                                                       
Query: 61  tgactataggagtttcagaccttaagttgcccctctgattaaacaaaggtggaggcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgactataggagtttcagaccttaagttgcccctctgattaaacaaaggtggaggcacag 367

                                                                       
Query: 121 agatggccagtgacaatagcaagctcttccctgggggcaccaagacactacccactggag 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 366 agatggccagtgacaatagcaagctcttccctgggggcaccgagacactacccactggag 307

                                                                       
Query: 181 aacactgccatcccttcctcattagcatggtcatatttcaaatgaggatatgctgtaagg 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 306 aacactgccatcccttcctcattagcatgggcatatttcaaatgaggatatgctgtaagg 247

                                                         
Query: 241 agagaacaatacatacgggttcgttagtcttgctcttttaaagata 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agagaacaatacatacgggttcgttagtcttgctcttttaaagata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)