BAC Information

Click to search

BAC

Clone NameMSMg01-128G02
Chromosome17 (Build37)
Map Location 69,606,592 - 69,607,013
singlet/doubletsinglet
Overlap geneEpb4.1l3
Upstream geneD930040M24Rik, EG622645
Downstream gene2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G02.T7 (MSMg01no128_g02.b1)MSMg01-128G02.TJ (MSMg01no128_g02.g1)
ACCAG336665AG336666
length731716
length of high quality
(start - end)
418 (73 - 490)61 (75 - 135)
definitionCHROMAT_FILE: MSMg01no128_g02.b1 PHD_FILE: MSMg01no128_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:27 2005CHROMAT_FILE: MSMg01no128_g02.g1 PHD_FILE: MSMg01no128_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACATATCCGCTGACTCAGTAAGTAACAGAGAGTTAGGATAGA
CTCTTAAGTCTGTATGTTATCACCTGCAGAGTTTTTATTTATAATACCAA
AGATCACCTTAATCTTTACTGTTTGTTTTATTTTTAGTTTGAGCAATTTG
AAAGCACCATTGGGTTCAAGTTGCCAAACCATAGGGCTGCCAAGCGCCTC
TGGAAAGTGTGTGTGGAGCATCATACATTTTTCAGGTAGGAAGCAAATAT
TTAGGTTTCTTCCTAACAGATTTTTGAACTGTTGGAGCCACTTTTACTAG
GGCAAAGAAAAAGTTGTAGAGGTAACTGTCATGGATGCTTTCTGCTCCTG
TAATGAGAATCACTCGTCTGAATGTTCCTTCCTTTTTAAAAATATACATG
CATATATCTCTCTTTGTGTGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGCGTATGCGTCGTCCTTTCTTCCCCTTCACTTTTCTTCCCCCTCCCCCT
TCTTTCACTTCTTCTTTTTTCTCCCTCCTCCTTTTCCCCCCCTTTTCCCC
CTTCTTCCCCTTTTTTTCTTTCTCTTTTTTCTCTCTTTCCTCCTTTATTC
TCTTTCCCCTATATTTTCCCCCCCATTATTCAATTTCCCGTTTTTTCCTC
TTTTCCTCCCCCCTCTCTCTTCCTTCCTTCT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CTAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAATGAGGAA
CACTCCTCCATTGTTGGTGGTAGCGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCTGAATTACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTATATACCCAGAAGACGCCCCAACTGGTAAG
AATGACACATGCTCCCCTATGTTCTTAGCAGTCTTATTTATAATATCCAG
AAGCTGGATAGAACCTAGATGCCCCTTAACAGAGGATTGCACACTCAATA
TGTGTTACTTCTTTTCCATGCATTAATACCCCTTTATTACTCAGAATGCT
TTCCTGCATTTCCTATCCAAATGGTTTGTTCTGTCACCGCTTTTTCCTGA
TTGATTTAACACATTTTACACCACCCTCCCCCTATTTGCCTCCCCCGCAT
TTTTCCCCACCCCCCTCTCACCCATCTTTTTTTCAAAATTTTTATATATT
TTGCCTTCCTCCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g02.b1 MSMg01no128_g02.b1 CHROMAT_FILE:
MSMg01no128_g02.b1 PHD_FILE: MSMg01no128_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:27 2005
         (418 letters)



>mm_chr17_69606392_69607213
          Length = 822

 Score =  758 bits (392), Expect = 0.0
 Identities = 413/422 (97%), Gaps = 4/422 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtaagtaacagagagttaggatagactcttaagtctgtatgttatcacctgcagagt 60
           |||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||||
Sbjct: 201 tcagtaagtaacagagcgttaggatggactcttaagtctgtatgttattatctgcagagt 260

                                                                       
Query: 61  ttttatttataataccaaagatcaccttaatctttactgtttgttt----tatttttagt 116
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 261 ttttatttataataccaaagatcaccttaatctttactgtttgtttgttttatttttagt 320

                                                                       
Query: 117 ttgagcaatttgaaagcaccattgggttcaagttgccaaaccatagggctgccaagcgcc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagcaatttgaaagcaccattgggttcaagttgccaaaccatagggctgccaagcgcc 380

                                                                       
Query: 177 tctggaaagtgtgtgtggagcatcatacatttttcaggtaggaagcaaatatttaggttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggaaagtgtgtgtggagcatcatacatttttcaggtaggaagcaaatatttaggttt 440

                                                                       
Query: 237 cttcctaacagatttttgaactgttggagccacttttactagggcaaagaaaaagttgta 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcctaacagatttttgaactgttggagccacttttactagggcaaagaaaaagttgta 500

                                                                       
Query: 297 gaggtaactgtcatggatgctttctgctcctgtaatgagaatcactcgtctgaatgttcc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggtaactgtcatggatgctttctgctcctgtaatgagaatcactcgtctgaatgttcc 560

                                                                       
Query: 357 ttcctttttaaaaatatacatgcatatatctctctttgtgtgtaagtgtgtgtgtgtgtg 416
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 ttcctttttaaaaatatacatgcatatatctctctctgtgtgtaagtgtgtgtgtgtgtg 620

             
Query: 417 tg 418
           ||
Sbjct: 621 tg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 822
Length adjustment: 9
Effective length of query: 409
Effective length of database: 813
Effective search space:   332517
Effective search space used:   332517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)