BAC Information

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BAC

Clone NameMSMg01-128I23
Chromosome17 (Build37)
Map Location 46,991,356 - 46,991,870
singlet/doubletsinglet
Overlap geneBC032203
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1
Downstream geneA330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128I23.T7 (MSMg01no128_i23.b1)MSMg01-128I23.TJ (MSMg01no128_i23.g1)
ACCAG336796AG336797
length716749
length of high quality
(start - end)
515 (69 - 583)226 (74 - 299)
definitionCHROMAT_FILE: MSMg01no128_i23.b1 PHD_FILE: MSMg01no128_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:42 2005CHROMAT_FILE: MSMg01no128_i23.g1 PHD_FILE: MSMg01no128_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAAT
TCCATCCTCATTGCGTTTTGATGTTACACAGGAAAAATGGCCAGGAAAGG
AGGAGGTGGAGGTGTCAGGAAGCGATCCGGTTCCCGTGTAGTCTGGTTCC
CAAGAAACTAGTGGCTTGTGCTCCAAGCAGCCACCTCATCCCGGATCTGG
GCAGCCCCAGCCCTGCAGGCCCACAGCCCCTGGAGGCCCTTGCCACAGGG
ATGTTATCAGTCCTGTTTGTTCCTAGAATTCAAGGTGACTCAAGAGGAAA
GATTAAGATAGGACACCGAGCTATTTAGAAATCAGATAGGCCAGTAACTG
CCGGCCTTCAAGTCCAGCCAAGCCGAGTAGACAGGATAGCTGTGCAGCTT
AAAAGGTTTTCACTTGCATGTGGACACAAAGCCCAAAAGCTTTTAGAAAC
CGTGGTTTCTCTAAAATAGTCTAGTTTATAGGGAAAGAATCATTAAAAGT
AGTGGTGAGTGGAATTTAAAACAAGACATCTGAACTCATGGAATTCACAG
CCAGTGGGAGAAAACCTGTAAGCTGGAGGTTTCATATGAGTTGGGAGTAG
CCCTTGCTGCCTAGTAAGCTTCTCTGAAGGCATGAGCTGTGCTAGCCACC
TCAGAAGCATGGTTTGTCCTTCCAAGCCGCCTGCGCAGAGTATACTGAAA
TGTATCGAATGCTGCT
GATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGTTCAAATGAAGAGACCCTGCCTC
TCTACTACGTATATGGATATTCAGCACTCAGGAGGCAGAGGCAAGAAGCT
CTCTGTGAGTTTGAGGCCAGCCAGACCGATGTAGCAAGATTCAGTCTTGA
AGAAGCAGAAGTAGAAGAAAATGCAGAAGAGGACAAAGGGTAGGAGAGGG
AAGAAGGATGGAGAAGGGAGAGGAAGAAGGAAGGAGAGAAAGGAGGAAGA
TTTGGTGTCTGATACCCCCACTTGCTTTCTTTTTCTTGGCGCCCCTTCCC
TTTTCGCGTTTCCCCCCTTTCTCCTCCCCCTTCTCCCCTTCCTTTTTCCC
TTTTTTTTTTTTTTTTTCTCCCCCCCCTTTTCTCTCCTCTTTTTTTCCTT
CTTTTTTTTTTCCCTTTCTCTCTCCTCCTTTTTTTTTTTTCTTTTTTTTT
TTCCTTTTCTTTTCCCCCCTTTTTTTTTCCTCCTTCTTTTCTTTCCCCCC
TTTTTTCCCTTTTTTTTTTCCCCTTTTCCTCCCCTCTTTCCCTCCTTCCC
CTTTTTCCCTTTCTTTCTCCCCTTTCCTCCCCCCCTTTTTTCCCTTTTTC
TTTCTTCCTCTCTTTTTTCCACCCTCCCCTTCTCTTCTCCCCTTCCTCCT
CTTTTTTCCTTTCCCCTCCCTCTCCCCCCTTTTTTTTTCTTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_i23.b1 MSMg01no128_i23.b1 CHROMAT_FILE:
MSMg01no128_i23.b1 PHD_FILE: MSMg01no128_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:42 2005
         (515 letters)



>mm_chr17_46991156_46992070
          Length = 915

 Score =  891 bits (461), Expect = 0.0
 Identities = 503/517 (97%), Gaps = 4/517 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgttacacaggaaaaatggccaggaaaggaggaggtggaggtgtcaggaagcga-tc 59
           ||||||||||||||||||||||||||||||| ||||||||||||||  |||||| || ||
Sbjct: 715 tgatgttacacaggaaaaatggccaggaaagcaggaggtggaggtggaaggaag-gagtc 657

                                                                       
Query: 60  cggtt-cccgtgtagtctggttcccaagaaactagtggcttgtgctccaagcagccacct 118
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 656 cggttccccgtgtagtctggttcccgagaaactagtggcttgtgctccaagcagccacct 597

                                                                       
Query: 119 catcccggatctgggcagccccagccctgcaggcccacagcccctggaggcccttgccac 178
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 catcccggatccgggcagccccagccctgcaggcccacagcccctggaggcccttgccac 537

                                                                       
Query: 179 agggatgttatcagtcctgtttgttcctagaattcaaggtgactcaagaggaaagattaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agggatgttatcagtcctgtttgttcctagaattcaaggtgactcaagaggaaagattaa 477

                                                                       
Query: 239 gataggacaccgagctatttagaaatcagataggccagtaactgccggccttcaagtcca 298
           |||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||
Sbjct: 476 gataggacaccgagctagagagaaatcagataggccagtaactgcccgccttcaagtcca 417

                                                                       
Query: 299 gccaagccgagtagacaggatagctgtgcagcttaaaaggttttcacttgcatgtggaca 358
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 416 gccaagccgagtagacaggatagctgtgtagcttaaaaggttttcacttgcatgtggaca 357

                                                                       
Query: 359 caaagcccaaaagcttttagaaaccgtggtttctctaaaatagtctagtttatagggaaa 418
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 caaagcccaaaagctttta-aaaccgtggtttctctaaaatagtctagtttatagggaaa 298

                                                                       
Query: 419 gaatcattaaaagtagtggtgagtggaatttaaaacaagacatctgaactcatggaattc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaatcattaaaagtagtggtgagtggaatttaaaacaagacatctgaactcatggaattc 238

                                                
Query: 479 acagccagtgggagaaaacctgtaagctggaggtttc 515
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 acagccagtgggagaaaacctgtaagctggaggtttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)