BAC Information

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BAC

Clone NameMSMg01-128N22
Chromosome17 (Build37)
Map Location 23,323,342 - 23,324,002
singlet/doubletsinglet
Overlap geneZfp40
Upstream geneEG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248
Downstream geneLOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128N22.T7 (MSMg01no128_n22.b1)MSMg01-128N22.TJ (MSMg01no128_n22.g1)
ACCAG337029AG337030
length705743
length of high quality
(start - end)		668 (38 - 705)489 (76 - 564)
definitionCHROMAT_FILE: MSMg01no128_n22.b1 PHD_FILE: MSMg01no128_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:06 2005CHROMAT_FILE: MSMg01no128_n22.g1 PHD_FILE: MSMg01no128_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
ACTGTACCTCTCCAGTCCTCAGAGACCTTAGAGGACGCTCTTCTTGCCTC
AGTCTCAGCACTTTGTTAATTTCTGGTCTATTTTTATTACACAGAAGTGT
GATTTGTTCACTTGTTTCTCGGAATTCATCCTTTTCTTCTTCGATTTTTA
TTTGTTTGTGTATATGACTTCCCACAGTTAAAACAAAAGGCAACACTGAC
ATCATTGCCATACACTACAATGTCCCCTTTCACCTCTAGTCCTAGTACTT
AAGGATTCATTCTTTTAGTTTGTATTAGGTAAAAATGCTTCCTCTGTACT
CTAATCTCGTCACAGAAACAAGTTGATTTCGTTAACTTATTGTATTATCT
TTGATTCTCTATTAGTTGCTATACAAACTTTTAAAAAATATCTTCCTATA
TACTATTTCAGATTGGCTTGTTCTTATGCTTATAAGGCCTCAGGCACATA
GTTATAGACAAATGTCTTTTATAACCAGCACCTCTTCCTGCCAAAACTTC
TGAGCATGTTTTTGTCAGCTACATCTATGCGACTGTCTTTTTTGAACTTG
TACTCACCCTGACACTCTTAAGAACAAAATTGCTCTCATTGCTCCATGAA
TTCTGTGCCACTGTTCCTTGATTTAAGTCTCTACAGTAGCTAACTAAGGA
ACAGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCCAACAATTGATAAAAACACATG
CAAAGATCAACACACAAACAAAAGGCAAAGTTTGGGGAATCCTGGGTAAG
AGGGGAAAGAAGGATTGTAGGAGTCAGAGGAATCAAAAACACAAGAAAAC
CTACATAAAACTTACCAGGGGCCCTAAGGGCTCACAGAGACTGAACCACT
TGCTACAAATGATGCATGAGACTAACCTAGGTACTCCAAACATATGTAAC
ATTTGTGAAGCTTGGTCATTACATGGGACACCTAAAAGCAGTAGTCAAAA
GCAGTCTGACTCTGTTGCCTGCCTTTGGGAAACTTTACCCCTGCTGGGCT
GCCTCCCCTTGGCCTCATTAGGATAACATGAAACTGTGCCTATTTATTGT
ACACCATGATATGTCAAAGCATGTTGATATGTGGGCAGGGGGGGTCCCTT
TTTCTGAAGAAAGGAGTATTGGATAGGAAGGAGGGAAAAGATGGGGGAAG
AGTAGGAGGAGAGTCCTTCCTTTCCTTCTCTTTCTCCCCTTTTTCCTTCT
CCTTCTTCGCCTTTTTATCCGTCCTCTTTTTCCGTCCCTTGCCCCTCTTT
TATTTTTGTATTCCTTACCCCCTAATCCTCTTATCCCCTATATTTCTCCC
CCATTTTCCCTTCTCTCCCTGAATCTTTTCTTCTATCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_n22.b1 MSMg01no128_n22.b1 CHROMAT_FILE:
MSMg01no128_n22.b1 PHD_FILE: MSMg01no128_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:06 2005
         (668 letters)



>mm_chr17_23323135_23324202
          Length = 1068

 Score = 1216 bits (629), Expect = 0.0
 Identities = 653/661 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttccatactgtacctctccagtcctcagagaccttagaggacgctcttcttgcctcagtc 67
           |||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 868 ttccatactgaatctctccagtcctcagagaccttagaggaagctcttcttgcctcagtc 809

                                                                       
Query: 68  tcagcactttgttaatttctggtctatttttattacacagaagtgtgatttgttcacttg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tcagcactttgttaatttctggtctatttttattacacagaagtgtgatttgttcacttg 749

                                                                       
Query: 128 tttctcggaattcatccttttcttcttcgatttttatttgtttgtgtatatgacttccca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tttctcggaattcatccttttcttcttcgatttttatttgtttgtgtatatgacttccca 689

                                                                       
Query: 188 cagttaaaacaaaaggcaacactgacatcattgccatacactacaatgtcccctttcacc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cagttaaaacaaaaggcaacactgacatcattgccatacactacaatgtcccctttcacc 629

                                                                       
Query: 248 tctagtcctagtacttaaggattcattcttttagtttgtattaggtaaaaatgcttcctc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tctagtcctagtacttaaggattcattcttttagtttgtattaggtaaaaatgcttcctc 569

                                                                       
Query: 308 tgtactctaatctcgtcacagaaacaagttgatttcgttaacttattgtattatctttga 367
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 568 tgtactctaatctcatcacagaaacaagttgattccgttaacttattgtattatctttga 509

                                                                       
Query: 368 ttctctattagttgctatacaaacttttaaaaaatatcttcctatatactatttcagatt 427
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 508 ttctctattagttgctatacaaactttttaaaaatatcttcctatatactatttcagatt 449

                                                                       
Query: 428 ggcttgttcttatgcttataaggcctcaggcacatagttatagacaaatgtcttttataa 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggcttgttcttatgcttataaggcctcaggcacatagttatagacaaatgtcttttataa 389

                                                                       
Query: 488 ccagcacctcttcctgccaaaacttctgagcatgtttttgtcagctacatctatgcgact 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccagcacctcttcctgccaaaacttctgagcatgtttttgtcagctacatctatgcgact 329

                                                                       
Query: 548 gtcttttttgaacttgtactcaccctgacactcttaagaacaaaattgctctcattgctc 607
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 328 gtcttttatgaacttgtactcaccctgacactcttaagaacaaaattgccctcattgctc 269

                                                                       
Query: 608 catgaattctgtgccactgttccttgatttaagtctctacagtagctaactaaggaacag 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 catgaattctgtgccactgttccttgatttaagtctctacagtagctaactaaggaacag 209

            
Query: 668 t 668
           |
Sbjct: 208 t 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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