BAC Information

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BAC

Clone NameMSMg01-128P04
Chromosome17 (Build37)
Map Location 84,107,755 - 84,108,021
singlet/doubletsinglet
Overlap geneMta3
Upstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3
Downstream geneHaao, Zfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128P04.T7 (MSMg01no128_p04.b1)MSMg01-128P04.TJ (MSMg01no128_p04.g1)
ACCAG337088AG337089
length731715
length of high quality
(start - end)
273 (44 - 316)239 (58 - 296)
definitionCHROMAT_FILE: MSMg01no128_p04.b1 PHD_FILE: MSMg01no128_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:12 2005CHROMAT_FILE: MSMg01no128_p04.g1 PHD_FILE: MSMg01no128_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCCAGTAACCCGTACCTCATCAGACGGATAGAGGAGCTCAACAAGG
TGAGTGAGCAGTGTGGCATCATCTGGCCAACACCGAAGCACTTCCCCTTT
AAGGTTACTGGGTAAAGGGCCCCGAGAGATGATTTTTACTTTCAGTTCCA
GGCTAACTACAGAGCTCTGCAGGCGTCTGAATATTTGTTGACTTCTTATA
AAGATTTTTGACCCATGTTTCGTTTCTTTCTTCAGATTGCTTTGAACCTT
GAAGATCAGGCCAGCTGTGTGTAACTTGATTTCTGTTCATATTTAATACT
GTATTAGGCATGTTTGTTTGTTTGAGCTAGGCTTACAATGACTTCAAAAA
AAAAAAATCTCAATCCTCCTGCCTCAGTTTCCCAAGCGCTGTGTTTCACA
TCTGCTAGTGAATGAGTATATTCTTCCTCGAGCTTTAGAAGGAATACCTT
ATTTGGGCGTGGTGGTCCCTGCCTACAGCCCGGAGCCTGCCAGCCCTATG
TCAGTCAGTCTCATCCTTCACCGCCCCCCCCAACACACTTAATTGTATAA
CGACGTTGTGGTAGCGTGATACTGTCACTTGGGAAACTGATGTATGATCC
TGAATTTTTATTTCGAGTCCGTCTCGCCCTCGTATTTTTTGACACCGTCC
TTATAAAACCCTTACTGACCTGTTTTTACCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGATCTTCTTGCCTCTGCCTCCCAAGTGCTGATATTACAGGC
ATACAGCACAGAACCTGGTTTTTAAGCATCCTTTAAAAGCAGCCTTTAAA
TACCATTTTTCTCTGAAACTAGAAGGTTGGGTCAGAGGTTAAGAGCATTT
GCTGTCTTCCAGAGACCCTGAGTTCAGTTCCTAGCACCTACGCTGGGCAG
CTCACAACCCCCTGTAACTCCAGCTGCAGAGGAGCTAGAGCTTGAGAGCA
ACATCCATGCGCTCTCACTCACTTGTAGCATGTACACACAGAGACATGTG
TACGGTCACATCAATAAAAAAATATATTTTAAAAATAGAATAAAAATATC
CACTATGTTTCTTAAAAGAACATCACAAGCTGCCACCTGTGACAGGGCGA
GCCACCCTCAAGTCTTTCCTACGTTCTCTGTTTGCCTGTCTGGTCTCAAT
TGCCCTTCTTACCACGCGGTTCCCGATCCCTCATAGCGCCATGTAAGCTC
ATGACCTCCTTATCTTCTTGAGATACATGGAGAGTCCCAGGTGACACTCA
TTGAGTTCCTCTGATTGCATGAGCCGACTACTTAATGTCGTGAACTGCCA
CCCTGCGGCAACACCGTTTCCCTCTGCCCGCGTAACCCTCATGGAAGAAC
TGGCTTATTGCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_p04.b1 MSMg01no128_p04.b1 CHROMAT_FILE:
MSMg01no128_p04.b1 PHD_FILE: MSMg01no128_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:12 2005
         (273 letters)



>mm_chr17_84107551_84108223
          Length = 673

 Score =  426 bits (220), Expect = e-123
 Identities = 256/268 (95%), Gaps = 2/268 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctccagtaacccgtacctcatcagacggatagaggagctcaacaaggtgagtga 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctccagcaacccgtacctcatcagacggatagaggagctcaacaaggtgagtga 264

                                                                       
Query: 65  gcagtgtggcatcatctggccaacaccgaagcacttcccctttaa-ggttactgggtaaa 123
           |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 265 gcagtgtggcatcacctggccaacaccgaagcgcttcccctttaagggttactgggtaaa 324

                                                                       
Query: 124 gggccccgagagatgatttttactttcagttccaggctaactacagagctctgcaggcgt 183
           ||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct: 325 ggg-cccgagaggtgatttttactttcagttccaggctaattacagagttctgcaggcat 383

                                                                       
Query: 184 ctgaatatttgttgacttcttataaagatttttgacccatgtttcgtttctttcttcaga 243
           |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 384 ctgaatatttgttggcttcttataaagatttttgacccatgttacgtttgtttcttcaga 443

                                       
Query: 244 ttgctttgaaccttgaagatcaggccag 271
           ||||||||||||||||||||||||||||
Sbjct: 444 ttgctttgaaccttgaagatcaggccag 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)