BAC Information

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BAC

Clone NameMSMg01-129C16
Chromosome17 (Build37)
Map Location 40,995,507 - 40,995,738
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
Downstream gene9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129C16.T7 (MSMg01no129_c16.b1)MSMg01-129C16.TJ (MSMg01no129_c16.g1)
ACCAG337244AG337245
length718766
length of high quality
(start - end)
234 (122 - 355)286 (133 - 418)
definitionCHROMAT_FILE: MSMg01no129_c16.b1 PHD_FILE: MSMg01no129_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:29 2005CHROMAT_FILE: MSMg01no129_c16.g1 PHD_FILE: MSMg01no129_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CGTGCCAAGTCACTGCCCATCCTGGGGCGTAGTAATGAGGCGATGGGCAA
GCAACAAATCAGGTGTTGACCCGCCACTCCAAGGTGTATATAAGCAGCAC
CATTTTCCGTGGTTCGGGGTCTTCCTCCTAGTGAAGCAATAAAGCTTGCT
GCAGAAGAATCCGGTTGTCCGAGTGTGTTCTTGCTGGCGAGGCACAAGTT
CGAGACGTATCTCTATGTTTATGATGATCTATACATGTTAATAATGGCTC
GGCGATCTGATTCTTTTATCATTGGAAACTGCATCTTCTGGAGGCTGGAG
AAATAATTTTTTAGACCACACCACTGGCTGTTCTGCCAAAGAATCCAAGT
TCTTCTCTTACGACCCACATGAAAAATCACAGCCAGCTGGAACTCCAATT
CCATGGGATCAGATGAACTTTTCTGAGCTTTGTGGACATCAGATATACAA
GTATTATGCAGATATACATGTAAACAACATTCACACTTTTTTTAAAAAAG
CAACTTTCATCTTCCAGATCCAGGATATTATTCAATTTTTGAGTAGTACC
AATATAGCCCATTAACATCATTTCACTTTTTGTGAAAAATTTTAACCCTT
TTTCTAATGGATCGTACTCAAAACTGGTTAGTATCAGGTCACTTCAGAAC
CATGGCCTTAGGTTGACG
NNNNAAGTTTTTTNNNNNCNCTTATCCTCCCTCTNGNGGAGCCGATAATC
NTNCCCACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGA
ATTGCAGAGAAGCACCTGAAAAAATGTTCACCATCCTTTATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTTTTGGTGGGATTGCAGGCTTGTACAAACACT
CTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTTTTGTTCATTTACCCCCAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATTTTCATAGAAAAACTTATTTATAA
TAGCCGGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATTC
ATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGAACTC
ACTGATAAAGTGGATATTAGCCCCTAAACTAGGATTCCTAAGAAATAAGG
TCCAATTTTGCTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_c16.b1 MSMg01no129_c16.b1 CHROMAT_FILE:
MSMg01no129_c16.b1 PHD_FILE: MSMg01no129_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:29 2005
         (234 letters)



>mm_chr17_40995305_40995938
          Length = 634

 Score =  389 bits (201), Expect = e-113
 Identities = 225/233 (96%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gccactccaaggtgtatataagcagcaccattttccgtggttcggggtcttcctcctagt 61
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 gccactccaaggtgtatataagcagcaccattttccgtggttcggg-tcttcctcctagt 261

                                                                       
Query: 62  gaagcaataaagcttgctgcagaagaatccggttgtccgagtgtgttcttgctggcgagg 121
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 gaagcaataaagcttgctgcagaagaatccggttgtccaagtgtgttcttgctggcgagg 321

                                                                       
Query: 122 cacaagttcgagacgtatctctatgtttatgatgatctatacatgttaataatggctcgg 181
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cacaagctcgggacgtatctctatgtttatgatgatctatacatgttaataatggctcgg 381

                                                                
Query: 182 cgatctgattcttttatcattggaaactgcatcttctggaggctggagaaata 234
           | ||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct: 382 ccatctgattcttttatcattggaagctgcatcttcgggagggtggagaaata 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)