BAC Information

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BAC

Clone NameMSMg01-130N09
Chromosome17 (Build37)
Map Location 47,550,281 - 47,550,560
singlet/doubletsinglet
Overlap gene1700001C19Rik
Upstream geneZfp318, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208
Downstream geneAI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130N09.T7 (MSMg01no130_n09.b1)MSMg01-130N09.TJ (MSMg01no130_n09.g1)
ACCAG338490AG338491
length1,230711
length of high quality
(start - end)
280 (126 - 405)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no130_n09.b1 PHD_FILE: MSMg01no130_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:50 2005CHROMAT_FILE: MSMg01no130_n09.g1 PHD_FILE: MSMg01no130_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGGTCGTATNNNNNGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGAGGTCAGCACTGACCGATAGGTGGCCCTGAGAGAAGC
AGGGACTAAGAGGAAACCCTTTAAATTCTCCAGGCCCTTCCGAATAAACT
CACCAGGTGGCAACCCTATCCATTTAGGTGCCAGGAAAGACCAGGGCAAA
GTTTATTGCTATTGAGAAGAGGCCTCCCTCAGCTGTCACGGCATACCTGG
CTAGCCCAGGTATACACTGCTTCTCCAGGCAGGAATGATCTTTCCCTCTG
GGACCCAGGACCATAGGATGAAGGTGCAGGATGGGGACTTCCAGATGCCG
CAGACCTAGGTGCGCCACAAGATCAGGTTTGCTGGAGGAACATCAAAGCG
TTTTCGGTTGTGGTCGGTTTCTCTTTGGTACAGGTAGCCACAGGTGGGCT
TCTGCAGTGTGTATACCCCCCCCAGAGAATTGGAATACTGTGAGTTGAAG
AAACTGAACCTGATGCTAGTGTCTGGGTTCTGCCCCCGAGGATCCACCAC
CACTGGTACATAAGCTGCCTCCAGAGTCTGCTCTCGGTCCCGTTTCCATT
TCTGGGACAATGCCGTCAGCGGCACCTTTGCCTTTGTGCCTGATGTCATC
TTTTGCCCACGGCTGGGGACTAAGGATTTCTGTGAATCCTAGGAAGAGAA
AAGGAAGGAGAAAGTTGGCAGGGATGAATGCCGGGGCACCAGACTGTGAT
GTTGCAATTGCTACAGCCAGGGCAGGAAGGAGAATGGGGCACGATGCGGG
GTCCCCAGCTCAGCTGGCCAAGATGCCAGAGCCCCCAGAACAGGAGACAG
CCTGCAAGCCCCTCCCCTAATCGCTGCTCCTGAGGACTTCCGCCTAATTT
TCAACAGCACCTGTCAGCTCCGAAAGCTGAGTACCTGGATGTTGACGTCA
GTGCCGTTCTTTCTTTCCCCCCCCTCCCCCCTTCACCAATCCTCACTCCT
CCCCAGGGCCTCCTGAAGCAAAGCTCCCCAATCTCTGGAAACGAATATGC
CCTCACCCCCCCTTCCTCCTGGAAAACCCACTCCCTTTGAACCCTTGGAA
GACCTCCCCCCATTCCCGGCCTCCGGGCCATTTCCTCTTTTGTTCCAAAA
GATTAATTTTGTGGGTTTTATAATACCCCACCAAATCTCCCACCTTTTGG
CCTCCTATATCACTTGGGTTAAAAAAAACC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGGGGCAGGCTGGAGAGAAGGCTTAG
GAGATTATGATCTTTCGCTGCTCTGGCAGAGGACCCAGGTTTGGTTCCCA
GCATCCACGCGGTGGTTCACAATCATGTGTAACTCCAGTTCCAGGGCACC
CTAGGACCTCTTCTGACCTCCCAGGGCATCAAACAAACAACACACGTGTA
TGTATGGCACACACACACACACACACACACACACACACCCCACATACACA
CAAAATATTAACAAATGTTTAAACAGAAGTTCGGTATATAAGCAAGTCAG
CATTTTCTTATGTCCCACCCGACCGAAAAGAAAAAAAAAAAAAAAGGACT
GGTCCCAGGTTCACCAAATGGATGAATGATAAGAATGATTTAAAAACAAC
AACAACAACAAAATGGACATGACCTTCTAGGTACATCGAAGGAGAAAGTA
TATTGTAGGTGTGTTGAGAGCACAGCCAGAGGCAAAGCCATCTAGGAGAG
TCCAGAGCTTTGTGCTGAGAGGGGGAGGGGGGATGGGAGAGGGTATTTTT
CTTCTCTCGGCCGGCGCCGGCTTCCCCTTTTCTTCGCTTGCCCCTTTCCC
TCTTTTTTTCTTTCGCCTTCCTTTTCCCTTTTTTTTTCTCCTCCGTCCTT
TCTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_n09.b1 MSMg01no130_n09.b1 CHROMAT_FILE:
MSMg01no130_n09.b1 PHD_FILE: MSMg01no130_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:50 2005
         (280 letters)



>mm_chr17_47550081_47550760
          Length = 680

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctccaggcccttccgaataaactcaccaggtggcaaccctatccatttaggtgccagg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctccaggcccttctgaataaactcaccaggtggcaaccctatccatttaggtgccagg 260

                                                                       
Query: 61  aaagaccagggcaaagtttattgctattgagaagaggcctccctcagctgtcacggcata 120
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaaagggcaaagtttattgctattgagaagaggcctccctcagctgtcacggcata 320

                                                                       
Query: 121 cctggctagcccaggtatacactgcttctccaggcaggaatgatctttccctctgggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggctagcccaggtatacactgcttctccaggcaggaatgatctttccctctgggacc 380

                                                                       
Query: 181 caggaccataggatgaaggtgcaggatggggacttccagatgccgcagacctaggtgcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaccataggatgaaggtgcaggatggggacttccagatgccgcagacctaggtgcgc 440

                                                   
Query: 241 cacaagatcaggtttgctggaggaacatcaaagcgttttc 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaagatcaggtttgctggaggaacatcaaagcgttttc 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)