BAC Information

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BAC

Clone NameMSMg01-130N13
Chromosome17 (Build37)
Map Location 43,147,922 - 43,148,666
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
Downstream geneTnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130N13.T7 (MSMg01no130_n13.b1)MSMg01-130N13.TJ (MSMg01no130_n13.g1)
ACCAG338497AG338498
length1,217729
length of high quality
(start - end)		753 (122 - 874)339 (73 - 411)
definitionCHROMAT_FILE: MSMg01no130_n13.b1 PHD_FILE: MSMg01no130_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:51 2005CHROMAT_FILE: MSMg01no130_n13.g1 PHD_FILE: MSMg01no130_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCAATTTNNNNNNGTCATTGGGCGCTAAGACTCCANAGGGAGAGGATC
CGCGGAATTCCTCCTAAAAACTTCCCTTGAAATAGACTGGGGAGTTATCA
TCAAGCCATTCATCCCCTATCTCTGAGATTGGCTAATCTTAATTCAAATT
GTCTTCTATCTCCTGGAGTTTGACCCTTCTACCCAATCAAGCCTCTTTCC
TGGATGGTCGCTATTCCTCCTGCTTGTTTTTCTGTGGTCTCTCAGTCCTT
CAACAAGTTGATTATTCATGTTCAAATAAATAAATAAATAAATAAATAAA
TCTATCTATCTATCTTTGGGGACTTTCAGGAGCCATGTCAAATGGCACTT
TACCTACAGAACTTTATACATTTGCTCTATGAGACATAGACCCTTTTCTA
CTTTCCCCTCACGTGTCTCAGACATGTCGTGTATGATATTATCCAATGGC
CAGTTTACATCTGCGCGCCTCAAAGGTCCTCAAAGGCAGAGTACGTGTCT
TAATTTTCAAATCTCCGTAGTGAAAATTGGAGGTAATGACCTCGCTCAAT
AAATATTTGTTAAGTGAAACAGGCTTGGAAAGGCTGGCAGCAATGGAGGA
GTTAACACATGGGATCTGCCCGGCTTTTCCAAGACTTAAACTTCTCCAAG
CTGTGTACAAACCATAAAGCTTTCATCCAAGATGTACCAATGTCCTGCTC
AGCCCTGGACTCAGATCAAACAACTTCTCCATGGCTCTGATTCTCTACAA
CACACTTAACAACCTCCTGTTCTTTGGTCTCCGATGGAATATCCACCCTT
CAGTGGCACATAGCAAGATCAAGTACCTGCGCATCAGGTCTCCGTGGCTA
CGGCAACAAAGACGGCAGCCTTGGATAAGATCGAGTGGGGATAGCATTGC
AGAGACAGCATTGTTCCGAGGTTTCCTTCTCTCTTTGATGATAAAGAAGA
GATGATTTGAAAAGCAAGCTGGCCCGTCCAATCAAAAAGTGGGACACCTC
TTGTTTTGTTTCCGAAAACACGGGGGGGATTTTGCCCAACAATTCCTCGA
AAAAAGGCGGGTCCATAATAGGGGTCAAACTTGCCAAAAAAGTTTGTCCT
AAAAATCCCCCCCCCCGGGGCCTTGGGGGGCCCCCCCTTATTAAATTTTC
TTTTTTTCATAAAAAAGGGGGAAGAGGGTTTTTTTGTTTTTTTTTTTTTT
CTTTAAAAAGAATAAAA

CGATAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACAAATGTAGGTGACC
TATAGATTTGCCAGCAGGAATTCCAGGCTAAGTGACTGCTATCTTAATTT
GCTGAGTCCATCTTTAGGACACTCCAGAACCATTACCGGGGCATGGGGGA
GCTCGAAACTGTTGCTGGCCCGTTGTCCTTGTCTCAGGCTAGGTAGCTTC
TGATGGCAGGGAAGTTTCTGACTAGCTGCCAGAAGCCTGGGTTGTTTGTT
TGTTTGTTTTCTAGTAACTGACTTGCTTGGACTTGACTAGTTCTTAGCCA
TAGTCTCCTGCACTGCCAATTTGAAGCCTGTCCTGGAATCAACCTAGCCT
TCTCACCTTGCCCCAGCTGCTATAGCCTGATTGGCTGTTGCTTAGGGTCT
GGGGTGGGGTGGCCCCGGTGGTAATATTTTTTTTTTNGTCGGTGTCGCCC
TAACTTCTTTCTTTTCTGTTTTTTCGCTTTATGCAAAAATATTTCGATTT
TCTCTTTTGTTTTCCGTTTTTCGTATTTTGTATTTTGAGTAACTTTTTCT
TTATATACTTGTTATTGTTATATACGTTTGACTAACCTCCGCAATAACCG
AAATATTATATCTTCCCTGTATCTTGACCTTTTTCCTTCTTTTACGCATA
CTTCTCCTTATCTCTTTTTTTATTTCTCTAACCCTCCCCTCCCATCTCTC
GTATCCTCTGCTCCTCCGTACCACCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_n13.b1 MSMg01no130_n13.b1 CHROMAT_FILE:
MSMg01no130_n13.b1 PHD_FILE: MSMg01no130_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:51 2005
         (753 letters)



>mm_chr17_43147536_43148688
          Length = 1153

 Score = 1297 bits (671), Expect = 0.0
 Identities = 729/753 (96%), Gaps = 8/753 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tctgagattggctaatcttaattcaaattgtcttctatctcctggagtttgacccttcta 60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 1131 tctgagattggctaatcttaattcaaattgtcttctgtctcctggagtttgacccttctg 1072

                                                                        
Query: 61   cccaatcaagcctctttcctggatggtcgctattcctcctgcttgtttttctgtggtctc 120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 cccagtcaagcctctttcctggatggtcgctattcctcctgcttgtttttctgtggtctc 1012

                                                                        
Query: 121  tcagtccttcaacaagttgattattcatgttcaaataaataaataaataaataaataaat 180
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  
Sbjct: 1011 tcagtccttcaacaagttgattattcatgtgcaaataaataaataaataaataaataa-- 954

                                                                        
Query: 181  ctatctatctatctttggggactttcaggagccatgtcaaatggcactttacctacagaa 240
                  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 953  ------atctatctttggggacttttaggagccatgtcaaatggcactttacctacagaa 900

                                                                        
Query: 241  ctttatacatttgctctatgagacatagacccttttctactttcccctcacgtgtctcag 300
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899  ctttatacatttgctgtatgagacatagacccttttctactttcccctcacgtgtctcag 840

                                                                        
Query: 301  acatgtcgtgtatgatattatccaatggccagtttacatctgcgcgcctcaaaggtcctc 360
            || |||| |||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 839  acgtgtcatgtatgatattatccaatggccagtttacatctgtgtgcctcaaaggtcctc 780

                                                                        
Query: 361  aaaggcagagtacgtgtcttaattttcaaatctccgtagtgaaaattggaggtaatgacc 420
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 779  aaaggcagagtacgtgtcttaattttcaagtctccgtagtgaaaattggaggtaatgacc 720

                                                                        
Query: 421  tcgctcaataaatatttgttaagtgaaacaggcttggaaaggctggcagcaatggaggag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  tcgctcaataaatatttgttaagtgaaacaggcttggaaaggctggcagcaatggaggag 660

                                                                        
Query: 481  ttaacacatgggatctgcccggcttttccaagacttaaacttctccaagctgtgtacaaa 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659  ttaacacatgggatctgcccggcttttccaagacttaaacttctccaagctgtgtacaaa 600

                                                                        
Query: 541  ccataaagctttcatccaagatgtaccaatgtcctgctcagccctggactcagatcaaac 600
            || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 599  ccgtaaagctttcatccaggatgtaccaatgtcctgctcagccctggactcagatcaaac 540

                                                                        
Query: 601  aacttctccatggctctgattctctacaacacacttaacaacctcctgttctttggtctc 660
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 539  aacttctccatggctctgattccctacaacacacttaacaacctcctgttctttggtctc 480

                                                                        
Query: 661  cgatggaatatccacccttcagtggcacatagcaagatcaagtacctgcgcatcaggtct 720
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 479  cgatggaatatccacccttcagtggcacatagcaagatcaaatacctgcgcatcaggtct 420

                                             
Query: 721  ccgtggctacggcaacaaagacggcagccttgg 753
            ||||||||| |||||||||||||||||||||||
Sbjct: 419  ccgtggctatggcaacaaagacggcagccttgg 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1153
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1143
Effective search space:   849249
Effective search space used:   849249
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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