BAC Information

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BAC

Clone NameMSMg01-131G18
Chromosome17 (Build37)
Map Location 31,492,492 - 31,492,732
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
Downstream genePde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131G18.T7 (MSMg01no131_g18.b1)MSMg01-131G18.TJ (MSMg01no131_g18.g1)
ACCAG338930AG338931
length763744
length of high quality
(start - end)
242 (76 - 317)476 (78 - 553)
definitionCHROMAT_FILE: MSMg01no131_g18.b1 PHD_FILE: MSMg01no131_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:38 2005CHROMAT_FILE: MSMg01no131_g18.g1 PHD_FILE: MSMg01no131_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCGGACGCGAGGCGC
GGAATTCATGAGTTGCCATAATATGAAATATAATATGGCAAAGGGTGTAC
CTGGGCAGGCCCACGCCATGGTGCGCCCCTGAGCAATTTAAGCCGTGCAA
GAGATCTATTATAAAGGGGTTTATTAGGGAAGGAGAGTGAGGATCTGGGA
TGGGGTAGCAGCAGATGAGTGGACGTGTGGACAGGCAGATGGATGGGGGT
GGGGGCAGAGTATATGAGGGCAGATAAGGGGAGATGCAGAAGACAGAAAA
TGGGAGGAGGGAATGAGAACTTTTTTTTTACACCCGCNCCACCATCTACC
CTTTTCTTTTTTTTTCTCCCCCCCCCCCCCTTCTTTTTTTTTTGTATCTC
TCGTCCTTTTTCCTGTTTCCCCCCCCTTATCTTTATTCTTTCGCTCCCCC
TGTTTCTCTTGCTCTTTCGTTTTTTCTTCGCCTTCCCCTCTTTCTTTTTC
TTCCTTCCTTTTTTCCGCCTTCTTTACTCCTTTTTTTTCTCGCGTTTTCT
TCTTCTCTTCGTTTTTCCTACTCGCCCTTTCTTTTTTTTTTCTTTTCTTG
GCCTTTTTCACCCCCTCACCTCTATTTCTGATTTTTTTTTTAACCTTACT
TTTTTATTTCTTTTCCTCTTCTTACACGCCGCGCGGGTTTTTCCCTTTTT
TTGTTCTTATTACCCACCCCTCCATTTCTCCCCTCCTCCTTCTTTTTTTT
CTCTTATTCCTTC
TTCTCGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCAAAAAGTGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGACTATGTAAGA
GACGATGCGTTTCAAAATAAATAAATAAATAAATAAATAAGTAAATAAAT
AAATAAATAAATAAATAAATAAATAGGTGATCCACTTCTTGGGGCTGGAG
ACATGGTTCAGGGGTTAAGAGTACTGTCTGGTCTTCCAAAGATCTCAGGT
TCAATTCCCAGCACCCACATGGCAGCTCACAACTGTCTGCAACTCCAGTT
TCAAGGGACCTGTTGCCCTCACAGTTTTGCACATACAATAAAATTAAATA
AATTATTAAAATGTACCACCAACAGAAACACAGCTCCTGCCTCAAGGGGA
AGAGAAGACAGCTTATTCTGGAGCTAAATGTAAATGGCTGTGACCCAGGA
ACACGAAGTTTACCCTGGATACTACACACTCCAGCACTGTATCAGTCCTG
TGAAGTTGTTACAGTAATGGAACAAAGCAAAGCTTATATCAAGGCTCTTT
ATAACACATTTGTGGGAATATCAGATATACGGTTGGGGGTGGGGGGTTCA
GCAAAGTAGAAAGAGTCATGTATGTGGATAACTGACATCCTGCCTGACAA
GTTAAGACATGAATGTAGACAAGGCAAGACCCCTGTGACGTTGACTAGCC
CAATCTGTGTTAGCAGGATAAATGTACATCAAAGATATGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_g18.b1 MSMg01no131_g18.b1 CHROMAT_FILE:
MSMg01no131_g18.b1 PHD_FILE: MSMg01no131_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:38 2005
         (242 letters)



>mm_chr17_31492292_31492932
          Length = 641

 Score =  414 bits (214), Expect = e-120
 Identities = 235/242 (97%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatataatatggcaaagggtgtacctgggcaggcccacgccatggtgcgcccctgagca 60
           |||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 201 aaatataatatggcgaagggtgtacct-ggcaggcccacgccaaggtgtgcccctgagca 259

                                                                       
Query: 61  atttaagccgtgcaagagatctattataaaggggtttattagggaaggagagtgaggatc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 atttaagccgtgcaagagatctattataaaggggtttattaggggaggagagtgaggatc 319

                                                                       
Query: 121 tgggatggggtagcagcagatgagtggacgtgtggacaggcagatggatgggggtggggg 180
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 320 tgggatggggtagcagcagatgagtggacgtgtggacaggcagatgaacgggggtggggg 379

                                                                       
Query: 181 cagagtatatgagggcagataaggggagatgcagaagacagaaaatgggaggagggaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagagtatatgagggcagataaggggagatgcagaagacagaaaatgggaggagggaatg 439

             
Query: 241 ag 242
           ||
Sbjct: 440 ag 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space:   147256
Effective search space used:   147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)