Query= MSMg01no132_n03.b1 MSMg01no132_n03.b1 CHROMAT_FILE:
MSMg01no132_n03.b1 PHD_FILE: MSMg01no132_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:27 2005
(496 letters)
>mm_chr17_26112349_26113244
Length = 896
Score = 932 bits (482), Expect = 0.0
Identities = 491/494 (99%)
Strand = Plus / Minus
Query: 1 attcactgatgccccaaacaaagccaccagcacaggagcctactgtgtcccatgaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 attcactgatgccccaaacaaagccaccagcacaggagcctactgtgtcccatgaagggg 809
Query: 61 catgtctatactgagctagaacacagtccagagatcttaaccagagccaagtgcattgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 catgtctatactgagctagaacacagtccagagatcttaaccagagccaagtgcattgta 749
Query: 121 ttactccagaaactgaggcaggagaatcaggaatttgctaccagcttaggctacattgta 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 748 ttactccagaaactgaggcaggagaatcaggaatttgctatcagcttaggctacattgta 689
Query: 181 agaccctgtgtgaacacaaaagcagtaagaatgtgaggttagctgaggttactttgtggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agaccctgtgtgaacacaaaagcagtaagaatgtgaggttagctgaggttactttgtggc 629
Query: 241 accctgatagggctggggagtagggaagggcaccttgaccagaaaagggatagtagtatt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 accctgagagggctggggagtagggaagggcaccttgaccagaaaagggatagtagtatt 569
Query: 301 aactcagtactgtcatttgggatgatttcatactgacaggacaacagtctatagacaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aactcagtactgtcatttgggatgatttcatactgacaggacaacagtctatagacaata 509
Query: 361 gattacacaaagtatactagcatctttttatttgagctttgttttttgttgacttattgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gattacacaaagtatactagcatctttttatttgagctttgttttttgttgacttattgg 449
Query: 421 ttttttggttttttttttaagttattttatgtatatgaacattttacgtgcgtgcgtgtg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 448 ttttttggttttttttttaagttattttatgtatatgaacattttacgtgcgtgtgtgtg 389
Query: 481 tgtgtgtgtgtgtg 494
||||||||||||||
Sbjct: 388 tgtgtgtgtgtgtg 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_n03.g1 MSMg01no132_n03.g1 CHROMAT_FILE:
MSMg01no132_n03.g1 PHD_FILE: MSMg01no132_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:27 2005
(533 letters)
>mm_chr17_25952271_25953203
Length = 933
Score = 971 bits (502), Expect = 0.0
Identities = 526/534 (98%), Gaps = 2/534 (0%)
Strand = Plus / Plus
Query: 1 cagatatgtatgtggtacacatgcaagagaacacccgtacacagaaaattctaaattttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cagatatgtatgtggtacacatgcaagagaacacccgtacacagaaaattttaaattttt 260
Query: 61 taaatatgaaaaagcatgtgtccaagtatcactgtgctggtagcacagtcagctatacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatatgaaaaagcatgtgtccaagtatcactgtgctggtagcacagtcagctatacag 320
Query: 121 gggatgtgactgagcctcagagccttttatagggatacagattttttttctcttttgaga 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggatgcgactgagcctcagagccttttatagggatacagattttttttctcttttgaga 380
Query: 181 ttgggctcctctgtgtagtcctggctgtcctggaactctctctgtacaaggctgctcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggctcctctgtgtagtcctggctgtcctggaactctctctgtacaaggctgctcttg 440
Query: 241 aactcagagatctgcctgcctctgcctcccaagcactggcatgtgccaccactgactacg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 aactcagagatctgcctgcctctgcctcccaagcactggcatgtgccaccactgactagg 500
Query: 301 cgcacagattttggagagctggtctgtgactcggggctattcaagcacctttcttctctg 360
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tgcacagattttggagagctggtctgtgactcagggctattcaagcacctttcttctctg 560
Query: 361 ggttctccgatcctagtcctcaagataaactccaggaaggggcatcagaggattggaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttctccgatcctagtcctcaagataaactccaggaaggggcatcagaggattggaggt 620
Query: 421 gaaaggaacagttaaggattccatctcccaccgggcatggtggcgcatgcctttaatccc 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaggaacagttaaggattccatctaccaccgggcatggtggcgcatgcctttaatccc 680
Query: 481 acg-actcgggaagcagaggcagacagatttctgagttcaaggccagcctggtc 533
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 a-gcactcgggaagcagaggcagacagatttctgagttcaaggccagcctggtc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
