BAC Information

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BAC

Clone NameMSMg01-133D18
Chromosome17 (Build37)
Map Location 88,635,085 - 88,635,391
singlet/doubletsinglet
Overlap genenone
Upstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133D18.T7 (MSMg01no133_d18.b1)MSMg01-133D18.TJ (MSMg01no133_d18.g1)
ACCAG340268AG340269
length713740
length of high quality
(start - end)
311 (39 - 349)188 (76 - 263)
definitionCHROMAT_FILE: MSMg01no133_d18.b1 PHD_FILE: MSMg01no133_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:00 2005CHROMAT_FILE: MSMg01no133_d18.g1 PHD_FILE: MSMg01no133_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGCGGAATTCA
TGGTATTTTCAGTATTAAACAAGAGATAACCTGAGGAGTTTTTAGTCATG
TCAAACTGGTGGTTTCACTGTGAAAACCAGCAGGGGAGACACACAGGGGA
AGCATTCACACAGTTTGGGCTGTGTGTACACATACCCACAACCAGACTTC
ATACACATGTACATGTCTCCAAGGTTATGCCAACACATTCCTAAGACCTA
AGCCTGTGTTGACTGTATAGCTGCCAACTGGCATTTATTGAAGTAAATAC
ATCTTTGCTGACCATTTTAGACACGGGTTCATTGAGGACACCTCAGATCC
TCNGTTAGGATCCCTAAACTTACACAGTCCGAGTCCTGGCCCAAACCTGG
TAGAAACCCACTGACAGAAAAAAAATAGCCTCGCGGGCTGAAGCACTCTG
TGTGGGAATCCTCAGTTAATACATAGAACCGAGAGACAGGAAACGATTCT
CACTGCTCCGCTGAAGGCCAGAAGCCTGCTCCTTTCAGAACTAACAGACG
AGGCACACAGGAAAGCCCACATCATGGTCTTCTCCTCCCATGTTCCCTCT
AGGATCATTCCAGTGTGTTCTTCTTCCCAACAACTGGAACTCCAATGTGT
ACCGCTGGAGACTTGTAAGAAGGTAAAACCCCCCTTCCTATAATGCTACA
GTCCTCAAGCCAA
CTCTATGCTGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGGAAAGCTAAGGCTACAGAGAGA
AATCCTGCCTCAAAAAAGAAAAAATACGAAAAGAAGGAGAGAACAAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAATTAAGGAATTAAGTAATCAAGCACTTTTATCTTTCTTTTT
CTCCCATCTTCTTCCTCTTCTCTCTTCCTTTTTTTTTTTCTCCTCTTTCC
CTCTTTTCTCGCACCTCTCTGTCTTCTGTTTCCCCTGCCATTTGCCCATT
ATCGCAACTGCATCCTTCCTATGTTTCTGTTCCCCCTTTCTCGCCACTAC
TCTCCTTCTGCTTCTCCTCTATCTTCTTCTCACCCTCTCATTTTTTTATG
CCCCTCTTACCTTTTTTTTTCCCCGTTCTTTTTCCCCCTTTTCTCCCATT
TCCTCTCCTTCTTTCCCCCTCCTTTCTTTCTCATTATTTTTTTCTTCGCT
TCTTTCTGCTCTTCTTGTCCCTTCCCTCTCCTGCTTTCTTCCTCTTCTCT
CGCTTCCTCTTTTTTTTCCTCCCTCCATTTTTCCTCTTCTTCCTCCCTTT
CCTTCTCTTACTTCCCTCACCCCTCCTCTTCTTCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_d18.b1 MSMg01no133_d18.b1 CHROMAT_FILE:
MSMg01no133_d18.b1 PHD_FILE: MSMg01no133_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:00 2005
         (311 letters)



>mm_chr17_88634881_88635591
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcatggtattttcagtattaaacaagagataacctgaggagtttttagtcatgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggaattcatggtattttcagtattaaacaagagataacctgaggagtttttagtcatgtc 452

                                                                       
Query: 65  aaactggtggtttcactgtgaaaaccagcaggggagacacacaggggaagcattcacaca 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaactggtggttttaatgtgaaaaccagcaggggagacacacaggggaagcattcacaca 392

                                                                       
Query: 125 gtttgggctgtgtgtacacatacccacaaccagacttcatacacatgtacatgtctccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtttgggctgtgtgtacacatacccacaaccagacttcatacacatgtacatgtctccaa 332

                                                                       
Query: 185 ggttatgccaacacattcctaagacctaagcctgtgttgactgtatagctgccaactggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggttatgccaacacattcctaagacctaagcctgtgttgactgtatagctgccaactggc 272

                                                                       
Query: 245 atttattgaagtaaatacatctttgctgaccattttagacacgggttcattgaggacacc 304
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 271 atttattgaagtaaatacatctttgctgaccagcttagacacgggttcattgaggacacc 212

                  
Query: 305 tcagatc 311
           |||||||
Sbjct: 211 tcagatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)