BAC Information

Click to search

BAC

Clone NameMSMg01-133I14
Chromosome17 (Build37)
Map Location 42,934,725 - 42,934,890
singlet/doubletsinglet
Overlap geneCd2ap
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797
Downstream geneTnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133I14.T7 (MSMg01no133_i14.b1)MSMg01-133I14.TJ (MSMg01no133_i14.g1)
ACCAG340488AG340489
length692755
length of high quality
(start - end)
287 (70 - 356)169 (67 - 235)
definitionCHROMAT_FILE: MSMg01no133_i14.b1 PHD_FILE: MSMg01no133_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:22 2005CHROMAT_FILE: MSMg01no133_i14.g1 PHD_FILE: MSMg01no133_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCAATTTCTCTATGAAGGCACTTAGTACTATACACTTTCCTCTTAGCTC
ATCTTTCATTGTGTCCCACCAGTTTGGGGATGCCATGCAATCATTTTCAT
TGAATCTAGGAATCTTTAATTTCTTTATTTATTTCTGTCTTGACCTAGTG
GTCATTCCATAGAGAGATGTTCAGTTTCCATTAGTAATAGGCTTTCTGTT
GTTTCTGTTGTTGAAATCCAGGTTTAACCCACGGTGGTCTGATAGAATTC
AGGGGGTTATTTCAATTTTCTTATGTCTATTGAGACTTGCTTTGTGACCT
ACTGTGTGTTCTTTTTCCCCCACCGCTCCAGTGATGTGCTGAGGTGTATT
CTTTTGTGTTTGGGTGAAATGATCTGTAGATATCTGGTAGGTCCACTTGA
TTCATAAACTCTGTTGTCTCCATTATTTCGCTGTTTAGATTTTGTCTGGA
TGACTTGCCTATTTGAGAGAGTGCAGTGTTGTGGTGGTCTCCTGCTATTA
ATGTGTGATGAGTGATGTGCGTTTTAAGCTTTTAGGATGGTTCTTTTACA
GATGTGGGGGCCCTTTAAGTTGGAGCATACATGTTATGGATTTCAGATGT
TATCTTGGCGGATTTTTCTTTTGATGGAGATGAAGTGCCCTC
CACGATGATAGGTTAGGCCTGGCGGCCGCCCGTCAAAAACAGTGTAGGTG
ACCTATAGAATGCCTCGCGGAATTCCAGGTGCTGCTGGCCATGACCTAAT
AAGGGGAAAGGAAGTTTTCCTGGCTGTAGGATATCTTCTCTGGCTAGGCA
CAGGTGGTGTGTTGCAGGGCTTCTACCACCAGTACACACAGGCTCAGGAT
GGAGTGTGGAGGATGGGGTGGGGAGAGATAGGGTCCTCCCCCCCACTTTC
TTTTCCTTCTTCCTACTCTTCGCCTTATCCTATCCCCTTCTCCTACCTCA
CCCCCTCCGATTAGCTTTTTTTTTTTTTTTTTTGTTCTTCCTTTCAACCC
CCCTCCCCTTTCCCCTTTCCCCTTCTTTATTCCGCCCTACGCTTTCTCCT
TTTTTTCTCCTTCCTTCTTCCCTTCCTCCTCCTTTTTTCTCCTTTTCCCC
TAATTACCCCACCCCATCTTTTCTCCATTATTCTCTATAACTTCTCCCCA
CATCGCTCATTTCTCACTTTTATATCCCTTCTACCTCCTTTTTCTCTTCC
TCCTCATTTCCCATTTCCCTTTCTTTTTTCCTTCTCATCCTCTTTCTTCA
TTAACGTTCTTATAGCCCCCTCCCTCTACTCTTCACCCTTCCTTCTCGTT
TTTTTCCCTTTTCATACTCTTTTGATCTCCCTTCCCTCCCTTTTTTTTAT
ATCCCTTTTTTGTTTATTTTTCCCTTTTTTTTCACTCCCCCCTCCCTCAT
TCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_i14.g1 MSMg01no133_i14.g1 CHROMAT_FILE:
MSMg01no133_i14.g1 PHD_FILE: MSMg01no133_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:22 2005
         (169 letters)



>mm_chr17_42934523_42935091
          Length = 569

 Score =  290 bits (150), Expect = 3e-83
 Identities = 162/166 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccaggtgctgctggccatgacctaataaggggaaaggaagttttcctggctgta 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggaattccaggtgctgctggccatgacctaataaggggaaaggaagttttcctggctgta 309

                                                                       
Query: 63  ggatatcttctctggctaggcacaggtggtgtgttgcagggcttctaccaccagtacaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggatatcttctctggctaggcacaggtggtgtgttgcagggcttctaccaccagtacaca 249

                                                         
Query: 123 caggctcaggatggagtgtggaggatggggtggggagagatagggt 168
           ||||||||||||||||||||| || || ||||||| ||||||||||
Sbjct: 248 caggctcaggatggagtgtggggggtgaggtggggggagatagggt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)