BAC Information

Click to search

BAC

Clone NameMSMg01-133J12
Chromosome17 (Build37)
Map Location 44,634,995 - 44,635,221
singlet/doubletsinglet
Overlap genenone
Upstream geneMep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133J12.T7 (MSMg01no133_j12.b1)MSMg01-133J12.TJ (MSMg01no133_j12.g1)
ACCAG340530AG340531
length700722
length of high quality
(start - end)
227 (118 - 344)61 (187 - 247)
definitionCHROMAT_FILE: MSMg01no133_j12.b1 PHD_FILE: MSMg01no133_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:26 2005CHROMAT_FILE: MSMg01no133_j12.g1 PHD_FILE: MSMg01no133_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAACCA
TCTCTGTCCNACATGATTCTTAACCACACAAACTAGGTTGCTGAGCATCT
GGGGCCCTTTANACCTGGATGGACCTTGATGGATGCTGATGTCAGGACAG
ATGAGGGATACAGCCTTCACCATATTTCTGAAAAGGACTTCTCGGAGGGC
CAACCCACTGTCAGACAGAGCAGTCTCTTAGGCAGAAAGGAGATCTTCCT
GTGTAGTAGTGATACAAGCTGTCTTGGTCACTCTCACAAAACGACCACAG
AGGGACTCCTGTTACCTTTGTTGAGTTTGGGATCACCAAAGAATGGTTCA
GATGACTCCCCCCCCCCCCCCAGCAGGAGCAAGTAAAATACTTGCAGGAA
TTGGAGGAGGAAATTCAGTCAATTGACCACGGGGGGGGTCAGGACCCCTT
GTAGAGTGATCTTGGGACATTCACTCAGAGGCAGTAAATGTGTTTTATTG
AGGCAGCTGAGGTGTGTCATCTGTCTGGATGCGGGCCCCGTGATGGGAGG
TTGGTAGCCTTGTTATCACGTCTGGTCCCTAAGAGCTGCTGTGTGCTTTA
TACCCAAAGGTTTCACGGGCCTCCCCAGGCCTCCCATAGGGCTGTGCATT
TTTGTGACATACTTCATTGTCCCCACCTGTACATTGCGATAGTGTCTATC

CGATGACAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCTGAAAACATGGTTAATTGGNTTAATAAACCATG
GACTTATGCTCTCTTTATAGTAGTCCGGAATTTATTTTAACTTTTAGGAA
CCCAGCAGCTACAGCTCAGCTCTACTAGACACCACTGCTGGAGGGGTTTT
ACAACCTAGAGTGATCTTCTTTGCAACAGTACATCTCAGACCCCAAAGGG
TTCACACGTGACCTGTTGTCCTGCTGAGACGTGACTCTAGTTGGGGAGCC
TCTGACCAGCTTCCACCTATCACCTTTCCTCAACTGACGTTAGCTTACGG
AGCCCACAGAGTGGTGACTGCCCACTCAAAGCTCCCATGACCCTTGCTCA
CCATCCATCTTGAACCTTACTTGGCCATATACGAACCAGATCCCCCCCCA
TGGTCTCACAGCTGAGCCTCACTCAGCACATTTGGATAATCCTGCCACCA
CGTTTCATTGCCCATGGTATGCCCCGTTACCACATTGTGCCCCCACCATA
ACCACATCATTCGCTCCCTTATTCTTTGATGCTTTCTGCAGTGTCTCCTT
CCCCTTACGCCTCATCTTTCCTCCGCTCTCGTCGCCGCATGTTGTATTTC
TGCGGCCCCCATTTCCTATACTGCTCCCTTCCATTCTCTTGCTACCTACC
CTCATACGCTTCTACCCCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_j12.b1 MSMg01no133_j12.b1 CHROMAT_FILE:
MSMg01no133_j12.b1 PHD_FILE: MSMg01no133_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:26 2005
         (227 letters)



>mm_chr17_44634795_44635421
          Length = 627

 Score =  400 bits (207), Expect = e-116
 Identities = 222/227 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatggaccttgatggatgctgatgtcaggacagatgagggatacagccttcaccatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gatggaccttgatggatgctgatgtcaggacagatgagggatacagccttcaccatattt 368

                                                                       
Query: 61  ctgaaaaggacttctcggagggccaacccactgtcagacagagcagtctcttaggcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 367 ctgaaaaggacttctcggagggccaacccactgtcagacagagcagtctcttagggagaa 308

                                                                       
Query: 121 aggagatcttcctgtgtagtagtgatacaagctgtcttggtcactctcacaaaacgacca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 307 aggagatcttcctgtgtagtagtgatacaagctgtcttggtcactctcactaaacgacca 248

                                                          
Query: 181 cagagggactcctgttacctttgttgagtttgggatcaccaaagaat 227
           || ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 247 catagggactccagctacctttgttgagtttgggatcaccaaagaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)