BAC Information

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BAC

Clone NameMSMg01-134B23
Chromosome17 (Build37)
Map Location 68,890,312 - 68,890,519
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc30, Lama1, Arhgap28, D930040M24Rik
Downstream geneEG622645, Epb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134B23.T7 (MSMg01no134_b23.b1)MSMg01-134B23.TJ (MSMg01no134_b23.g1)
ACCAG340914AG340915
length1,1251,141
length of high quality
(start - end)
206 (493 - 698)375 (474 - 848)
definitionCHROMAT_FILE: MSMg01no134_b23.b1 PHD_FILE: MSMg01no134_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:13 2005CHROMAT_FILE: MSMg01no134_b23.g1 PHD_FILE: MSMg01no134_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTGNNNAAAACATTGGCGCTAAGACTACTAAGGGAGAGGATCCGC
GGAATTAGGTGTTTCAAGACCCTTTAAGATTTTCCTTTCTTTTCTTTTCT
TTTCTTTTCCCTTTTAAACTTCCTTTTTTTTTTTTTTTTTTTTGGTTTTC
AAGACAGGGTTCCTCTGTGTAGACCTGGCTGTTTTGAAACTCACTTTGTA
GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGT
GCTGGGATTAAAGGCGTGCACCACCACACCTGGCTGATTTTATTTTCTTG
CATGTATCTAGAAATAGAAACACAGACTCTCATGGTATTTCTATTTTTCT
TTATTTGGGAGGGGGGGCAGAGCTGTCATATTATTTTCCCAAATGTTTTT
ACTTAGACATCTACCTCTCTTTCCACATCTTCAACAATATATCTGCCTGT
TTGACTTTTTGATTAGAACCTTTCTTACTGGGAAAAAAAGGTATCTCAGT
GTGAGTTTAATTTACCATTCCCTCATTGAACATTTTTAAAAAAACATACT
ATTGAGTATTTGTATATCTGCTTTCCATTACATTTTTAATATTAATTGGA
TTAGGCAGCACTTTTGTGTATAATAGCTATCTAGATAATTAGAAATATTA
TACAGTTAATTATCAATACCATCTTCTGATATCAGCAAGTGGGATTTAGT
AGGGCTTGTGTATAAACTGAGTGAAGCACAATAACTTCGAATTAGAGATT
TGTGCCCTGAGATTCCAAGGAAGAAAATTGAGAGAACAAAAAAGAGGAAA
AATACTAGCCATAAAATAATTGTGGATGTTTACAGAAATTTATGGACCAT
TTTGGGTAGGAAGTTTTTTTCTCTGGTTTAGATTAAATTAAAAAAATTTT
TCAACAGAGCAATGGGAACCGAAAAAGGGGGAAATTTTTTTCCAGGGGGT
TATAATTTACTTTTTAAAAAAACTGGGTTTTTGTAAAATCTTTAAAAAAA
TGTATGGGTCCCTGGGGAAAAATCTTTTTTGGTGGGGGGAACCCCCACCC
TCACAAAAAAATGATTTTCTCCCCCCTCGCACAAGGGGAACTTTATTCCC
CAAAAATTCCATAATACCCTACGTC
NCCCACTCNTNNNNAAAAGATCGTGATGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTAATCACACACACACA
CACACACACACACAAACACACACCTTAAAAGACCCACATCTTTCCACTTT
TTCCTCCAAAATGCTGGGGTCAACTTGTGAACCATCACACCCATTCTTAG
AGAAAACACACATAAAATTAGTCCCAATTCTATCATTCTGAATAAAAACT
GACTCCACATGGGTCAAAGGCCTCATTTTTTTCTCTTTTATTAGTTTTTT
TTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTATCC
CCTCCTCCCTCCCCCTGCTCACCAACCCATCCACTTCTGCTTCCTGGCCC
TGGCATTCCTTTATACTGGGGCATAGAACTATCACAGGACCAAGGGCCTC
TCCTCCCACTGATTTCCAGCCCACCCATCCTCTGCTACATATGTAACTGA
AGCCATGAGTCCCTCCATGTGTTTTCTTTGGCTGGTGGTTTAGTCCCAGG
GAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATGGGGCT
GCAAAACTCTTCAGCTCTTTGGGTACTTTCTCTAGTTCCTTCCTTGGGAA
CTCTGTGCTCTGTCCAATGTATTTATCAGGCACTTCTGTATTTATCAGGC
ACTGGCAGAAAACACCTCAATTGGAAACCCAAAACACAGAAACTTCTAGA
AGAAAATGCATGCAGTACCCTACAGGATATAGATGTAGGAAAAGGACTTT
GTGAATAAGATTCTGTTCATTATTAAGGCCAACAACTGACAACTAGGATC
CCATAAACCTCACCAGCTCCCAAGGGGTAGTGAGGCCATGGATCTGAAAT
GAGAACCCTGTCCCACCATTGGCCATCTTCAACATAAAGCCCCAAGGGTT
GGAAAGCTTTTTTGGTTGAGGGGACAGAAATTCTGGTAAATCTCAAGGAC
CCCAAAGGTTTGCTTGGGACCCCTGGAACTTTTTTTTCTTTTGAACGGCG
AAGGGACGATTTTTTGAAATCTTTATCTCGCCGGGGATGGTTTTTTTTAT
GTCCGGGGCCATTTTCTCTTTATGGAAAATTCCCCAACGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_b23.b1 MSMg01no134_b23.b1 CHROMAT_FILE:
MSMg01no134_b23.b1 PHD_FILE: MSMg01no134_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:13 2005
         (206 letters)



>mm_chr17_68890112_68890719
          Length = 608

 Score =  368 bits (190), Expect = e-106
 Identities = 203/208 (97%), Gaps = 2/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcagtgtgagtttaatttaccattccctcattgaacattttt--aaaaaaacatact 58
           |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |
Sbjct: 201 atctcagtgtgagtttaatttaccattccctcattgaacatttttaaaaaaaaacatagt 260

                                                                       
Query: 59  attgagtatttgtatatctgctttccattacatttttaatattaattggattaggcagca 118
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 attgagtatttgtatatctgctttccattacatttttaatattaattgtattaggcagca 320

                                                                       
Query: 119 cttttgtgtataatagctatctagataattagaaatattatacagttaattatcaatacc 178
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cttttgtgtataatagctatctagataattagaaatattatgcagttaattatcaatacc 380

                                       
Query: 179 atcttctgatatcagcaagtgggattta 206
           ||||||||||||||||||||||||||||
Sbjct: 381 atcttctgatatcagcaagtgggattta 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 608
Length adjustment: 9
Effective length of query: 197
Effective length of database: 599
Effective search space:   118003
Effective search space used:   118003
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)