Query= MSMg01no134_d19.b1 MSMg01no134_d19.b1 CHROMAT_FILE:
MSMg01no134_d19.b1 PHD_FILE: MSMg01no134_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:27 2005
(264 letters)
>mm_chr17_67239401_67240064
Length = 664
Score = 445 bits (230), Expect = e-129
Identities = 253/266 (95%), Gaps = 10/266 (3%)
Strand = Plus / Minus
Query: 1 aaatgccgtgttatagtaaggttctgtctggttgagggatctctcattggtggaagagat 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaatgcagtgttatagtaaggttctgtctggttgagggatctctcattggtggaagagat 298
Query: 61 aagttgaactggttatggtaaataagtcttcccttcccttggaaaatattcagtgtctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aagttgaactggttatggtaaataagtcttcccttcccttggaaaatattcagtgtctgc 238
Query: 121 ttttgtatgagcacgtttaaaaaaatacaggcacaacttaataataaaatagaatcttca 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttttgtatgagcaagtttaaaaaaatacaggcacaacttaataataaaatagaatcttca 178
Query: 181 atttatataaatataaatatagctgattg-----tttttggtagacagaagttcttcatg 235
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 177 atttatataaatataaatatagctgattggaagc-----ggtagacagaagttcttcatg 123
Query: 236 gggcttgcagctttgctctttaaatg 261
|||||||| |||||||||||||||||
Sbjct: 122 gggcttgctgctttgctctttaaatg 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no134_d19.g1 MSMg01no134_d19.g1 CHROMAT_FILE:
MSMg01no134_d19.g1 PHD_FILE: MSMg01no134_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:27 2005
(526 letters)
>mm_chr17_67063600_67064525
Length = 926
Score = 884 bits (457), Expect = 0.0
Identities = 484/493 (98%)
Strand = Plus / Plus
Query: 34 accaccatgatgtggtgaagccaagggggtccttgcaagaccctgaacagtgttgttgag 93
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 234 accaccatgatgtggtgaagccaagggggtctttgcaagaccctgaacagtgttgttgag 293
Query: 94 atgattctactccagagctatgaggtttaatcagcctctttgctttgtaaggtagattcc 153
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgattagactccagagctatgaggtttaatcagcctctttgctttgtaaggtagattcc 353
Query: 154 ccaggaactttattatagtaatgaaaaaaacagactaatatagcatccgatcactgaaca 213
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ccagggactttattatagtaatgaaaaaaacagactaatatagcatccgatcactgaaca 413
Query: 214 cagccacccacatatgtgtgcgtgttcactcgtgtactcattagtataatcgttgttttg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cagccacccacatatgtgtgcgtgttcactcgtgtactcattagtataatcgttgttttg 473
Query: 274 acacttcttagatcgtgccttgtctgctcatcttgatattcttttctggcttaaagctga 333
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 474 acacttcttagatcgtgccttgtctgctcatcttgatattcatgtctggcttaaagctga 533
Query: 334 gggtagagaaggcacagcagatggtggcaaatgaaaaggagaccccagattttgcaatag 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gggtagagaaggcacagcagatggtggcaaatgaaaaggagaccccagattttgcaatac 593
Query: 394 cttcagttcacctctttcctgacacttcctcgtgtctgtctttcattcgtcttctcaaac 453
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 594 cttcagttcacctctttcctgagacttcctcgtgtctgtctttcactcgtcttctcaaac 653
Query: 454 tccacatgttaaacagccattcagccatttccttaaatctccagccctttcttggaggat 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tccacatgttaaacagccattcagccatttccttaaatctccagccctttcttggaggat 713
Query: 514 ggggtgaggtagg 526
|||||||||||||
Sbjct: 714 ggggtgaggtagg 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
