Query= MSMg01no134_l15.b1 MSMg01no134_l15.b1 CHROMAT_FILE:
MSMg01no134_l15.b1 PHD_FILE: MSMg01no134_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:25 2005
(407 letters)
>mm_chr17_63638018_63638824
Length = 807
Score = 675 bits (349), Expect = 0.0
Identities = 386/405 (95%), Gaps = 16/405 (3%)
Strand = Plus / Plus
Query: 5 gaattctcatgaatggagagaaaagtcatttcatagagcagactggaatggaccttcaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatgaatggagagaaaagtcatttcatagagcagactggaatggaccttcaat 264
Query: 65 gctagatagagaataacaggcaacgctg---gtggtggctcagaaagagtgaaaaggctg 121
||||||||||||||||||||||| || |||||||||||||||||||||| || |
Sbjct: 265 gctagatagagaataacaggcaa---tggcagtggtggctcagaaagagtgaa---gcag 318
Query: 122 gtggtgccactga-aagaccggagtgccagcttggcttcactcaatgaatcgcaattgct 180
|||| | || ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgg----a--gagaaggctggagtgccagcttggcttcactcaatgaatcgcaattgct 372
Query: 181 caaagctgcagtatggaagtctgcctgttgggattgtgacatgagacctcacatatgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caaagctgcagtatggaagtctgcctgttgggattgtgacatgagacctcacatatgttc 432
Query: 241 tcagggttgcctttcagtacaaagaaggcagggagcaagcactgcttaccctggatacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcagggttgcctttcagtacaaagaaggcagggagcaagcactgcttaccctggatacac 492
Query: 301 tgcagagttctaagtgtaaacgggaaatgtgggacacggctttaaaggctagaacataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgcagagttctaagtgtaaacgggaaatgtgggacacggctttaaaggctagaacataaa 552
Query: 361 gaggcatgttcaacccaagtgtctgcagaaatggtctctacactt 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gaggcatgttcaacccaagtgtctgcagaaatggtctctacactt 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_l15.g1 MSMg01no134_l15.g1 CHROMAT_FILE:
MSMg01no134_l15.g1 PHD_FILE: MSMg01no134_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:25 2005
(657 letters)
>mm_chr17_63785216_63786274
Length = 1059
Score = 1185 bits (613), Expect = 0.0
Identities = 644/655 (98%), Gaps = 2/655 (0%)
Strand = Plus / Minus
Query: 5 tttaggaataattgaatgaaactgt--aaaaaaaaatcaccttatgttcccaatgcctgc 62
||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||
Sbjct: 859 tttaggaataatttaatgaaactgtaaaaaaaaaaatcaagtcatgttcccaatgcctgt 800
Query: 63 attttagagtcaccgatgccatattagagccccagctgttagcacagtgattcactgaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 attttagagtcaccgatgccatattagagccccagctgttagcacagtgattcactgaaa 740
Query: 123 agctgtaaagtctctcgtgagatactggtgctgacgatcttcttctgctcctaatgagtc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agctgtaaagtctctcgtgagatactggtgctgacgatcttcttctgctcctaatgagtc 680
Query: 183 gagtgtacagacctggaaattgcagttggagtcctcttaagaaagacacattctttctaa 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gagtatacagacctggaaattgcagttggagtcctcttaagaaagacacattctttctaa 620
Query: 243 acattagggaattaattgtctgcagtgcgtaggacccaaatgtgcacactgaggtttgtc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acattagggaattaattgtctgcagtgcgtaggacccaaatgtgcacactgaggtttgtc 560
Query: 303 tatccattgctgtagatgttctgggaatacttttctatgatgtctaccctttattcagat 362
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 559 tatccattgctgtagatgttctgggaagacttttctatgatgtctatcctttattcagat 500
Query: 363 tcccaactgacagttaacatggtactgtgtgtgggttctttaggccttcagaatttcaca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcccaactgacagttaacatggtactgtgtgtgggttctttaggccttcagaatttcaca 440
Query: 423 ggcactaccttggtcacctggacacctgggcctcctgacaggcagccagtcaggacaggg 482
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggcactaccttggtcacctgtacacctgggcctcctgacaggcagccagtcaggacaggg 380
Query: 483 ctaacccaagctaactatttattttatcttatctggcgtttcacaagataggtgttcctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctaacccaagctaactatttattttatcttatctggcgtttcacaagataggtgttcctg 320
Query: 543 gtagctcgtgagagccagtgtgattttctagaattacttagctttacgtaacagggagcc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtagctcgtgagagccagtgtgattttctagaattacttagctttacgtaacagggagcc 260
Query: 603 ccagcctacctgatgggtagcttgctcctttcagtaatgcgcactgtgactcagg 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccagcctacctgatgggtagcttgctcctttcagtaatgcgcactgtgactcagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1059
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1049
Effective search space: 678703
Effective search space used: 678703
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
