BAC Information

Click to search

BAC

Clone NameMSMg01-135J12
Chromosome17 (Build37)
Map Location 24,234,100 - 24,234,738
singlet/doubletsinglet
Overlap genePdpk1
Upstream geneLOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5
Downstream geneAmdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135J12.T7 (MSMg01no135_j12.b1)MSMg01-135J12.TJ (MSMg01no135_j12.g1)
ACCAG342013AG342014
length714728
length of high quality
(start - end)		639 (61 - 699)270 (68 - 337)
definitionCHROMAT_FILE: MSMg01no135_j12.b1 PHD_FILE: MSMg01no135_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:45 2005CHROMAT_FILE: MSMg01no135_j12.g1 PHD_FILE: MSMg01no135_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAAGCCGCGGAATTCAAGC
CATTTTCGTCTATATAGCAAGTTCCAGACCAGCCAGAGATACATAGTGAG
ATCCAAAGACATCAGACTTCTTTTTTTTATTGACATTTGCTTTTTATTTG
ATATGTATGCATTCGCTTTTATAATTTATAATTCCTTGCTGATTATTGCT
TTTTGGGTAGAAAGCCATCCAGTGGACAAATGTGGCTGCCATACCACAGG
ATTATAGTAGACATGTAGTGTTGTGGGTTCTTTAGAGATGGATAGAAGCC
CTGGAGGGACAATTTGAAGAAATTTCTAGCCCAGAGCATATAAGTCCTAG
AGTAGGCTTGGCAGTGATCATAGCATTGAGGTTTTTTGAGAGATGCAGCT
GGACCTTGCCGGTGGTCTCATTCATGAATAGGAGAAGCATTAAATGTGTA
GAGTGATGCAGAGACCGGCACTGGAATAGGTGCCTGTTTTTGTTTTGCTT
TTTATGTGAGGGTGTTTTGCCTACAAGTATGTCTGTGTACCAAGTGCATG
TGTGAGGCCCATGGAGACTACAAGATAACATCAGATATGTTGGAACTGGA
GTTAGGATGGTTGCAAAACACCAGGTAAGTTCTGGGAATGGAACCTAGGT
CCACGGAATAGCAATCAGCACTCTTAACCACGGAGTCATCTCTCCAGTCT
CCAAGAGATAGGGA

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACGGAACAATGAAAATTCTTTTAGTGCACCTC
CTGTGCAATTGAGGTTATCTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTG
TTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA
CTTTGTAGACCAGGCTGGCCTCAAACTCAGAATTCCACTTACCTCTGACT
CCCAAGTGCTGGGATTAAAGGCGTGCGCCACCGCGACTGGCTTGAGGTTA
TCTTAATCCTTATTTTTTTTGATGTTGGGTGAGTGGGGAGAAGGCTCATC
GTATACACCCCCCCCCGCCCCCACACGAACCCCACATGTTACTCTCTCAC
ATCCTCTGCCCCCCTCAATAAACCAAACCTTCGAACTCGTCCTTCACATC
TGCCCAACTCCAAATACCCTCTTCTTCCACCTTCCCTTGCCCTGTATCTC
TCTTCTATCGATACCCTTACTCTACATCGCTTACTCCTTCTATATTCTTT
AACCACCCCGTCCCCTAACTTCCGTTCCCCCGTCCCCTCATTAATTCTCT
CTCCTTCCCCCTCGATCCCCTTTCTTCTAAATTTACCATCCTCCCAATCC
CCCTAATCACCCCTTTTTCTTCTTTCCCCTTCCCCTTCCGGACTTATCGC
TCATTTTCACTTCTTATTTTCCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_j12.b1 MSMg01no135_j12.b1 CHROMAT_FILE:
MSMg01no135_j12.b1 PHD_FILE: MSMg01no135_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:45 2005
         (639 letters)



>mm_chr17_24234063_24235101
          Length = 1039

 Score = 1197 bits (619), Expect = 0.0
 Identities = 634/639 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatagcaagttccagaccagccagagatacatagtgagatccaaagacatcagacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tatatagcaagttccagaccagccagagatacatagtgagatccaaagacatcagacttc 617

                                                                       
Query: 61  ttttttttattgacatttgctttttatttgatatgtatgcattcgcttttataatttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttttttttattgacatttgctttttatttgatatgtatgcattcgcttttataatttata 557

                                                                       
Query: 121 attccttgctgattattgctttttgggtagaaagccatccagtggacaaatgtggctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 attccttgctgattattgctttttgggtagaaagccatccagtggacaaatgtggctgcc 497

                                                                       
Query: 181 ataccacaggattatagtagacatgtagtgttgtgggttctttagagatggatagaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ataccacaggattatagtagacatgtagtgttgtgggttctttagagatggatagaagcc 437

                                                                       
Query: 241 ctggagggacaatttgaagaaatttctagcccagagcatataagtcctagagtaggcttg 300
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctggagggacaaaaggaagaaatttctagcccagagcatataagtcctagagtaggcttg 377

                                                                       
Query: 301 gcagtgatcatagcattgaggttttttgagagatgcagctggaccttgccggtggtctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 376 gcagtgatcatagcattgaggttttttgagagatgcagctggaccttggtggtggtctca 317

                                                                       
Query: 361 ttcatgaataggagaagcattaaatgtgtagagtgatgcagagaccggcactggaatagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttcatgaataggagaagcattaaatgtgtagagtgatgcagagaccggcactggaatagg 257

                                                                       
Query: 421 tgcctgtttttgttttgctttttatgtgagggtgttttgcctacaagtatgtctgtgtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgcctgtttttgttttgctttttatgtgagggtgttttgcctacaagtatgtctgtgtac 197

                                                                       
Query: 481 caagtgcatgtgtgaggcccatggagactacaagataacatcagatatgttggaactgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 caagtgcatgtgtgaggcccatggagactacaagataacatcagatatgttggaactgga 137

                                                                       
Query: 541 gttaggatggttgcaaaacaccaggtaagttctgggaatggaacctaggtccacggaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gttaggatggttgcaaaacaccaggtaagttctgggaatggaacctaggtccacggaata 77

                                                  
Query: 601 gcaatcagcactcttaaccacggagtcatctctccagtc 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 76  gcaatcagcactcttaaccacggagtcatctctccagtc 38


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |