BAC Information

Click to search

BAC

Clone NameMSMg01-135K08
Chromosome17 (Build37)
Map Location 61,687,025 - 61,687,372
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725
Downstream geneLOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135K08.T7 (MSMg01no135_k08.b1)MSMg01-135K08.TJ (MSMg01no135_k08.g1)
ACCAG342053AG342054
length831717
length of high quality
(start - end)
89 (63 - 151)387 (76 - 462)
definitionCHROMAT_FILE: MSMg01no135_k08.b1 PHD_FILE: MSMg01no135_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:49 2005CHROMAT_FILE: MSMg01no135_k08.g1 PHD_FILE: MSMg01no135_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTTGGGCGCTATAGTATCCTATATTTCCGATCGGCGGATTCCTGCTG
CTTTCGCTAAAATGTGTGGTGGATCTAGGCCCAGGCCATTCTGGGTCAGT
CTCTGTGAGCCCCTGTGGGTTCAGGTTAGTTGACTCTATAGACCTTCTTC
CGGTTCCTTGACCCTCTGATCCATCCATTCTTTCCCCGACTCCTTTCTCA
AAGACTCCTGATCTCTGCCTAATGTTTGACTATGGGTCCCTGCATCTATT
TCCATCTTCTACTGCATGATTCATCTCAGAGTACAATTATTCTTGTTTCC
TGTTCTTTTTGCACTTCTTAGTATTATTATCACTGTTTAGAGGAAGGCCT
CTCCCTCTCATGATGTACGCTCTCAAGTGTATGTCATTACATTGTTTTGT
TTTATTACTTTCTAAACTCTGATCTCATCCTTATCTGCTACGAACTAATT
TATTGTCTTTTGTAGTGTGCTTTTGGCTCAATTCAATATTCCCTCCCACT
AGCAATAAACACCTCTAAAATCCTTCCACATATTTATTTTCTTATTTCTT
CTCCCTATTATTTCTCTCCCTCATGTCCTCTTATTCTATTAAAAATCCCC
GTATCTCTTTAGTATTTAATTAACTACACACAATAATATACATCATCTCA
GATCTTATAAGTTACCCTCATCTTACATATCCATACTCCAATTAATTTTT
CCTATCCTCTATTACCACACCCAACACCTACTCTTTTACACCCCACGCAT
ATTACCTATATACTCCTCATCTCTTATATTTTCCCCTTATCATTTTCTTC
TTCACCCTTATCTTTTCTTTCCCGTTCCCCT
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGAGTAGAAGAAAACATTCGCAGA
AGCAGGGTTTTCTTGAAAAACTCATTCATGAATCAGCTTATTAGCAAACC
ACCCGAAATGTTTAGATCATGGGCAGTAAATTGAATCAGCTGATTTTGTT
TCTATTTTCAATATTTACCTTAAATTATATGTGCATGGATATGTCTAGGC
TTGCATACATGCACATATGAATACATGCTCATGGACTCCATAAGACATCA
TCATATCACCCGAAGATGAAACTACAGATGGTTGTGAATCACTTGACACA
GTGGCCCACCATTCGTCCTCTTAATACTGCAAAGCATTTGTGTATATGTT
GACAAAGACGTTGGTGTGCAAATAAAATGACTACTGGCGAGATACTGAGA
ACCTTGTGATAAAACAGAACACTGGATTTGAAGCAAGGCAAGTTAGAATC
TACACCTCATATATAATTAATGCCCTACTCTGCCAGTGCCTGACAAATAA
AGAAGTGGATGCTCACCACCACCCCTTGGGATGGAGCACAGGGTACCCAG
GGAAAGGAGCTAGAAAAAAATACCCAAGGGAACCGAAAGAATTTTGGAAC
TCCCTAAGGAAAAACCGCCATTTGGACCTAACCCGGTATTCCCCAAAATT
TCCCCAGGAAAGTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_k08.g1 MSMg01no135_k08.g1 CHROMAT_FILE:
MSMg01no135_k08.g1 PHD_FILE: MSMg01no135_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:49 2005
         (387 letters)



>mm_chr17_61687025_61687811
          Length = 787

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagtagaagaaaacattcgcagaagcagggttttcttgaaaaactcattcatgaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aggagtagaagaaaacattcgcagaagcagggttttcttgaaaaactcattcatgaatca 289

                                                                       
Query: 61  gcttattagcaaaccacccgaaatgtttagatcatgggcagtaaattgaatcagctgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gcttattagcaaaccacccgaaatgtttagatcatgggcagtaaattgaatcagctgatt 229

                                                                       
Query: 121 ttgtttctattttcaatatttaccttaaattatatgtgcatggatatgtctaggcttgca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 228 ttgtttctattttcaatatttaccttaaattatatgtgcatgcatatgtctaggcttgca 169

                                                                       
Query: 181 tacatgcacatatgaatacatgctcatggactccataagacatcatcatatcacccgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tacatgcacatatgaatacatgctcatggactccataagacatcatcatatcacccgaag 109

                                                                       
Query: 241 atgaaactacagatggttgtgaatcacttgacacagtggcccaccattcgtcctcttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atgaaactacagatggttgtgaatcacttgacacagtggcccaccattcgtcctcttaat 49

                                                           
Query: 301 actgcaaagcatttgtgtatatgttgacaaagacgttggtgtgcaaat 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  actgcaaagcatttgtgtatatgttgacaaagacgttggtgtgcaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)