Query= MSMg01no136_c04.b1 MSMg01no136_c04.b1 CHROMAT_FILE:
MSMg01no136_c04.b1 PHD_FILE: MSMg01no136_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:25 2005
(513 letters)
>mm_chr17_15990204_15991116
Length = 913
Score = 814 bits (421), Expect = 0.0
Identities = 489/531 (92%), Gaps = 34/531 (6%)
Strand = Plus / Minus
Query: 5 gaattcttttctc-aacaaatcatttatgtgattattcagtgaaaaatatttttcatcta 63
||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcttttctcaaataaatcacttatgtgattattcagtgaaaaatatttttcatcta 578
Query: 64 tcaatataagcaataattattaaatttttaaatatttgaacaagaagacccctatatcca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcaatataagcaataattattaaatttttaaatatttgaacaagaagacccctatatcca 518
Query: 124 gcttaacttcttctgaagaagataatggacacaaaagtaaatgagcaaacaagatcatta 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acttaacttcttctgaagaagataatggacacaaaagtaaatgagcaaacaagatcatta 458
Query: 184 cagaaaattatcatgattcagactgtcaacaggaaactaaacagggttttatctcataaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cagaaaattatcatgattcagactgtcaacaggaaactaaacagggttttatctcataaa 398
Query: 244 gatcctgaaaaacaaaaagaggaaaaagaaagagatgaatactaggcagcctccctgact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gatcctgaaaaacaaaaagaggaaaaagaaagagatgaatactaggcagcctccctgact 338
Query: 304 caatggagacttgaaggttgatgcttggctggaaaaacagcaacaacaacagcagcag-- 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 337 caatggagacttgaaggttgatgcttggctggaaaaacagcaacaacaacaacagcagca 278
Query: 362 ------------g----agcaacatcaacaacagcagcaacaacaaca---gcagcagca 402
| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 277 acaacaacaacagcagcagcaacagcaacaacagcagcaacaacaacaacagcagcagca 218
Query: 403 acagcaacaacagtagtatcaacaacagaagcggcagcagaagctgcagcagaaaatgtc 462
||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 217 acagcaacaacagtagtgtcaacaacagaagc------------tgcagcagaaaatgtc 170
Query: 463 atgtgcagaaagatctcaaagtaatccaggaactttagagaatgtggctga 513
||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 atgaacagaaagatctcaaagtaatccaggaactttagagaatgtggctga 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_c04.g1 MSMg01no136_c04.g1 CHROMAT_FILE:
MSMg01no136_c04.g1 PHD_FILE: MSMg01no136_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:25 2005
(322 letters)
>mm_chr17_15882232_15882953
Length = 722
Score = 611 bits (316), Expect = e-179
Identities = 316/316 (100%)
Strand = Plus / Plus
Query: 1 ttaatagcagttctgtgagtggaagcaggtaaggcttgctgggcatcttattgtcagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatagcagttctgtgagtggaagcaggtaaggcttgctgggcatcttattgtcagcat 260
Query: 61 ttaatcccagcaatggggagacagaggcaggcagatctctgagttcaagactagccagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatcccagcaatggggagacagaggcaggcagatctctgagttcaagactagccagaa 320
Query: 121 atgcacagaccatactcagaagcaaccatgcaagcaaacttgttttacctctactctgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcacagaccatactcagaagcaaccatgcaagcaaacttgttttacctctactctgtt 380
Query: 181 ggaacttgaaacttaattaagttatagcctaggtttcagtttgattggtcttgttttatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaacttgaaacttaattaagttatagcctaggtttcagtttgattggtcttgttttatg 440
Query: 241 ggataaacccaaaatgaatgaaacaaccaaaaatacactttcttctgtgttttttttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggataaacccaaaatgaatgaaacaaccaaaaatacactttcttctgtgttttttttttt 500
Query: 301 tttttttttttttttt 316
||||||||||||||||
Sbjct: 501 tttttttttttttttt 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
