BAC Information

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BAC

Clone NameMSMg01-136F01
Chromosome17 (Build37)
Map Location 17,746,246 - 17,746,904
singlet/doubletsinglet
Overlap geneLnpep
Upstream geneLOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297
Downstream geneEG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136F01.T7 (MSMg01no136_f01.b1)MSMg01-136F01.TJ (MSMg01no136_f01.g1)
ACCAG342550AG342551
length725716
length of high quality
(start - end)
672 (52 - 723)589 (79 - 667)
definitionCHROMAT_FILE: MSMg01no136_f01.b1 PHD_FILE: MSMg01no136_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:39 2005CHROMAT_FILE: MSMg01no136_f01.g1 PHD_FILE: MSMg01no136_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACTTGTCTCTTCATTGCATCACTGACATCCTTGCCTCT
TCATGGCCTTGTCATCAACAGCTACAACATAGCTTCACTTTCTTACACCT
TTTCATAAAGCCATATCAAAAGCTGTGTGAGATGCGCTCATTCCTTTTTA
TCAGCTCTAGAGAATATTAGAAAGTTTCGTTTTAAAAGCTGAAGAAAAAA
AAAGCCGGACTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGA
AGCAGGTGGATTTCTGGGTTCGAGGTCAGCCTGGTCTACAAAGTGAGTTC
CAGGACAGCTAGGGTTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAA
ACAAAAAAACAAAAAAACAACCGAATCTAATTGGCTGGGGACTGCCTTTG
TGGCTTTCTAATGAAGGACAAAATGTCTCTGTCCAATTCCCCCAGAAGGC
CCCACAGTAGCACAGGAAAGGAAACTGACTCACCCACACTGCTTAGGCCT
TAAATGGACAACAGTTCTCTAGCCATGAAATGAGCATACAAGATGAGAAA
TGAAAAAGGAAAATACTGGTTCACTTTCCATCTTAAGCTTTGAAAGTTTT
TCACATAAAGAGACTCCCCAACCCCACATCACACCCTCTCCAAACACCGA
GACAGGGTTTTATGAAACACTGTCT
CCCCCCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGAGTCTTTAATTTCTTCG
TTTATTTCTGCATTGACCCAGCAGTTTTTCACTACAGAGTTGTTAAGTTT
CCATGAGTTTGTAAGCTTTTTGATGTTTCTATTTCTTTTGAAATCCAGCT
TTAATCTGTGGTGCTCTGATAGGATGCAGGGGGTTATTTCAACTATATTT
TATCTGTTGAGATTTGCCTGTGGCCAAGTATGTGGTCAATTTTGAAGACA
GTTTGGTAAGGTGCTGAGAAGAAGGTATTATTTTTTTGTGTTTGGGTGAA
ATGTTTTGTAGATATATGTTAGGTCCATTTGGTTTATAAAGGCTGTTATC
TCCAGTATTTCTCTGATTAGTTTTTGTCTGGATCACCTATCTATTGGTGA
GAGTGTGTTGATGAAGTCTCTCACAATCAATATGTGAGGGGCAACATGTT
ATTCAAGCTACAGTAGTATTTTGTTTTTGTTTTTAACTAGAAACTTGGGT
GCCCTTATGTTTCTGGTATATATACTAAAAATTGAAATGTTGTGGAATGA
TTCCAAATGATATCCTGCTACACTTAATGTCAGTGATTAGTCCAGTCATC
ATCAGAGAGGCTTTATCCAACAACTGGTGGGAGCAGATGCAGAGAGCAAC
AGCCAAACATTAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_f01.b1 MSMg01no136_f01.b1 CHROMAT_FILE:
MSMg01no136_f01.b1 PHD_FILE: MSMg01no136_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:39 2005
         (672 letters)



>mm_chr17_17746042_17747113
          Length = 1072

 Score = 1214 bits (628), Expect = 0.0
 Identities = 655/668 (98%), Gaps = 9/668 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacttgtctcttcattgcatcactgacatccttgcctcttcatggccttgtcat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacttgtcttttcattgcatcactgacatccttgcctcttcatggccttgtcat 264

                                                                       
Query: 65  caacagctacaacatagcttcactttcttacaccttttcataaagccatatcaaaagctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caacagctacaacatagcttcactttcttacaccttttcataaagccatatcaaaagctg 324

                                                                       
Query: 125 tgtgagatgcgctcattcctttttatcagctctagagaatattagaaagtttcgttttaa 184
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tgtgagacgcgctcattcctttttatcagctctagagaatatcagaaagtttcgttttaa 384

                                                                       
Query: 185 aagctgaagaaaaaaaaagccggactggtggcgcacgcctttaatcccagcacttgggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctgaagaaaaaaaaagccggactggtggcgcacgcctttaatcccagcacttgggag 444

                                                                       
Query: 245 gcagaagcaggtggatttctgggttcgaggtcagcctggtctacaaagtgagttccagga 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 gcagaagcaggtggatttctgggttcgaggccagcctggtctacaaagtgagttccagga 504

                                                                       
Query: 305 cagctagggttacacagagaaaccctgtctcaaaaaaaaaaaaaaacaaaaaaacaaaaa 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||      
Sbjct: 505 cagctagggttacacagagaaaccctgtctcaaaaaaaaaaaaaaa-aaaaaaa------ 557

                                                                       
Query: 365 aacaaccgaatctaattggctggggactgcctttgtggctttctaatgaaggacaaaatg 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 -acaaccgaatctaattggctggggactgcctttgtggctttctaatgaaggacaaaatg 616

                                                                       
Query: 425 tctctgtccaattcccccagaaggccccacagtagcacaggaaaggaaactgactcaccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 617 tctctgtccaattcccccagaaggccccacagtagcacaggaaaggaaactgactcacc- 675

                                                                       
Query: 485 acactgcttaggccttaaatggacaacagttctctagccatgaaatgagcatacaagatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 acactgcttaggccttaaatggacaacagttctctagccatgaaatgagcatacaagatg 735

                                                                       
Query: 545 agaaatgaaaaaggaaaatactggttcactttccatcttaagctttgaaagtttttcaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agaaatgaaaaaggaaaatactggttcactttccatcttaagctttgaaagtttttcaca 795

                                                                       
Query: 605 taaagagactccccaaccccacatcacaccctctccaaacaccgagacagggttttatga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 taaagagactccccaaccccacatcacaccctctccaaacaccgagacagggttttatga 855

                   
Query: 665 aacactgt 672
           ||||||||
Sbjct: 856 aacactgt 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)