BAC Information

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BAC

Clone NameMSMg01-136N11
Chromosome17 (Build37)
Map Location 37,307,874 - 37,308,498
singlet/doubletsinglet
Overlap geneLOC630355
Upstream geneLOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1
Downstream geneUbd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136N11.T7 (MSMg01no136_n11.b1)MSMg01-136N11.TJ (MSMg01no136_n11.g1)
ACCAG342932AG342933
length716709
length of high quality
(start - end)		661 (56 - 716)625 (85 - 709)
definitionCHROMAT_FILE: MSMg01no136_n11.b1 PHD_FILE: MSMg01no136_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:21 2005CHROMAT_FILE: MSMg01no136_n11.g1 PHD_FILE: MSMg01no136_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCCNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCTGATGCTTTCTCAGAGTGAATTTGTCAGTATAG
CATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCCGTATGAATTCT
CTGATACTTTCTCAGAGTGCATTTGTCAGTAAAGCATTTGTCGCATTCAC
TACATTTGTAAGGTTTCTCTCCTGAATGAATTGTATGATGAATACTAAGA
TGGGAAGGTTGGGTAAAGCATTTGTCATTTTCACTATATTTGTAAGATTT
CTTTCCTGGATAAATTCTCTGCTGACTTTGAAGATTGTCACTCTGAGTAA
AGTATTTGTCAAATTCACCACAAGTGTAAGTGTTCATTTCACTATTGTTT
TGTCTCACAATGGGTTTATGTTTACAAACCAAAACCTCATCAAGATTTTT
ATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGTTCCTTGATTGAGACTAA
TGATAGAAGATCCCTTTAAACAGTTTACACAGTCTTTATATGTGCAAACT
TCTTTTGTGGTCCCAGTTTTATGTCTTTTTAGGTTTGAGGATTGGAGAGT
GGCATCTCTTTGGTTAGTGTTATAAGGTGTACTTCCGGAGGATTCATGAA
TCACATTTCTAAGCTCATTACATTTAGAAGACTTCTTTCGGATATGCCCA
TGCTCATTGACAATGG

CCCCNNNTTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATCAGTTAGTTT
TCATTGTTTCAACAAACATTTGTTGAGCACCATGTAGAATTTGAACACTG
AATCTAATGACTTTGTTCTTTATGAGTACCAGCAGTTATAAACAACTGTG
AGGTTGGATCAATGACTTGATGGTAAATATTAGTGTAGCATTGGTCTAAT
TTTCTAAGTGTAGACATGGATTTGTGGATGGCTCATATTTGGCCTTTGGT
AAACTATTTCAGGAGATTCACTCATGGACTGATGTCTGTCCTGTGGGTGA
GATTTTCCCCTACATGAAATAATTAAATTTCCAGAGAGATCAGTTAACCT
ATTGTATTCTTTATCAGAAATTGCACGAACATTCAGGGTGCTTTTGTGTA
GAGCTCACTCTTTAAAAACAGTCATCATGCTTACTAAAGTAAAAGCAAAT
GCCTTGTCTTCATTCTGAAAGCTCTGTCCTCAACATTTTATCTTACAAAT
ATGGAATAAGAAGAGCTAAACACAGGCTGGAGAGATGGCTCACCGGTTAA
GAGCAGTGGCTGTTCTTCCAAAGGTCATGAGTTCAATTCCCAGCAACCAC
ATGGTGGCTCACAACCATCTGTAGTTGGATCTAATGCCCTCTTCTGGTGT
GTCTGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_n11.g1 MSMg01no136_n11.g1 CHROMAT_FILE:
MSMg01no136_n11.g1 PHD_FILE: MSMg01no136_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:21 2005
         (625 letters)



>mm_chr17_37307674_37308698
          Length = 1025

 Score = 1170 bits (605), Expect = 0.0
 Identities = 620/625 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgatcagttagttttcattgtttcaacaaacatttgttgagcaccatgtagaatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgatcagttagttttcattgtttcaacaaacatttgttgagcaccatgtagaatttga 260

                                                                       
Query: 61  acactgaatctaatgactttgttctttatgagtaccagcagttataaacaactgtgaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactgaatctaatgactttgttctttatgagtaccagcagttataaacaactgtgaggt 320

                                                                       
Query: 121 tggatcaatgacttgatggtaaatattagtgtagcattggtctaattttctaagtgtaga 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggatcaatgacttgatggtaaacattagtgtagcattggtctaattttctaagtgtaga 380

                                                                       
Query: 181 catggatttgtggatggctcatatttggcctttggtaaactatttcaggagattcactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggatttgtggatggctcatatttggcctttggtaaactatttcaggagattcactca 440

                                                                       
Query: 241 tggactgatgtctgtcctgtgggtgagattttcccctacatgaaataattaaatttccag 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tggactgatgtctgtcctgtgggtcagattttcccctacatgaaataattaaatttccag 500

                                                                       
Query: 301 agagatcagttaacctattgtattctttatcagaaattgcacgaacattcagggtgcttt 360
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 501 agagatcagttaacctattgtattctttatcagaaattgtaggaacattcagggtgcttt 560

                                                                       
Query: 361 tgtgtagagctcactctttaaaaacagtcatcatgcttactaaagtaaaagcaaatgcct 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tgtgtagagctcactctttaaaaacagtcatcatgcttactaaagaaaaagcaaatgcct 620

                                                                       
Query: 421 tgtcttcattctgaaagctctgtcctcaacattttatcttacaaatatggaataagaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtcttcattctgaaagctctgtcctcaacattttatcttacaaatatggaataagaaga 680

                                                                       
Query: 481 gctaaacacaggctggagagatggctcaccggttaagagcagtggctgttcttccaaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctaaacacaggctggagagatggctcaccggttaagagcagtggctgttcttccaaagg 740

                                                                       
Query: 541 tcatgagttcaattcccagcaaccacatggtggctcacaaccatctgtagttggatctaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatgagttcaattcccagcaaccacatggtggctcacaaccatctgtagttggatctaa 800

                                    
Query: 601 tgccctcttctggtgtgtctgaaga 625
           |||||||||||||||||||||||||
Sbjct: 801 tgccctcttctggtgtgtctgaaga 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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