BAC Information

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BAC

Clone NameMSMg01-137L17
Chromosome17 (Build37)
Map Location 26,766,705 - 26,861,005
singlet/doubletdoublet
Overlap geneErgic1, Atp6v0e, A930001N09Rik
Upstream geneTmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668
Downstream geneBnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137L17.T7 (MSMg01no137_l17.b1)MSMg01-137L17.TJ (MSMg01no137_l17.g1)
ACCAG343582AG343583
length740738
length of high quality
(start - end)		700 (41 - 740)651 (68 - 718)
definitionCHROMAT_FILE: MSMg01no137_l17.b1 PHD_FILE: MSMg01no137_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:32 2005CHROMAT_FILE: MSMg01no137_l17.g1 PHD_FILE: MSMg01no137_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,766,705 - 26,767,426)(26,860,451 - 26,861,005)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGACCGCGGAATTCTC
CTGAGACTGCGTAGGCTCTGCATTCCCTGAGATTCTAGAGCCTCTGATGG
TGGGTTCAGAAAGAGCTGCCCCTCGCTGGAGGGAGGTGAGACCTGGCTTC
AAGTCCTCTTCCTCCTCAGCAAGCAGTGGCCACAGGACACTGGGGTTTAC
AGCTGCGATGACAGCAATGCCACAGTGGCATCCACCACGGCACAAAGCCC
ACGGGTGCATATGAGAGAGCACACTGTTCATTCCAGGCCTTGCATCAGAG
TCAGATCTAGGCTCCGTCCGGTAACACTGTGGACAGGTGAGCGAGTGAGG
TCCCAAGGCAGGTGGCGATAGACAGCCAGAACATGCCCATCACTGCCTTA
CATCTGCCGATCAGCTCAGTGTAGGTCGTCCCCTTGGTGGGCTACATGGG
GATGGACCAGAGGAGGCCAAGAGCTGAAGTGGAAAGGGATATAGAGTCAG
CAGGTCTTCCTATAGGAGTGAGCACTGGACAGCAGTGTGGGAAGTCATAG
GTTTAGGCTGCAGCCACCCCCAGTGGGGACCACCAACAGGGACCCCCCAA
CAGCATCGCCTTGGAAGTGCCAGGGAGGCAGAACCTTGGGCTCTACCTCC
AGCATCCTGAAATGCTCCCAAGACTGCAGTCACCAAACTCTAAGGATGTC
AAGACTCCTAAGGAGAGTGTGGAGCCATATTATAAACGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAACCCTGT
CACTGCTTAGATGCCTATGTGTATAGGAAACAAGACAAACCAATTTCATG
CCTGGGGCTAGTGGTGAGAGAAGAGGGATAACTACAAAAGAGGCACTATG
TACAGAATAGCAGATTTAGTCACAGCAGTGGCTAGATGGTAGTATTTATT
AAAGCTCAAAATTCTGTTAACTTTCTTCTATTTTTTTCTTGGTAGGGGAA
GTAGGAAAGAGCAGTGTTGAATCTGAATGAAGATTTATTTATAAGCTATT
CTTTAATAATGATGATTTTAAAGAAGTATCTATCTGCAGATGGTGGCACA
TGCCTGTAATCTTAGCACTTAGAGACTCAGAAGGGTGGATTGCCATGAGT
TCAAGGACAGCTTGGGCTACAGAATGTTTCAGACCGATCTGGGTTACATT
ATGAGTCCTTCTTTCAAAAAGCAACTAAGGTATATGTAGCGGCACACTCC
TTTAATCCCAGTCCTCAGAGGAGAGGTGAATTTCAATGAGTTCTTAGCCA
GCCTGATCCACAAGTGATCATGCTAGCAAGGTTACATAGTAAGACCCTGT
CTCAAAAAATTTTTTTTAAGTTTAAAAACAAAAATGAAGGCTGGCTAGGA
CGGCTCAATGGATAAGGGCACTTTCCACCAAGCTTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_l17.b1 MSMg01no137_l17.b1 CHROMAT_FILE:
MSMg01no137_l17.b1 PHD_FILE: MSMg01no137_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:32 2005
         (700 letters)



>mm_chr17_26766529_26767626
          Length = 1098

 Score = 1222 bits (632), Expect = 0.0
 Identities = 689/724 (95%), Gaps = 28/724 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctcctgagactgcgtaggctctgcattccctgagattctagagcctctgatggtg 62
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gaattttcctgagactgggtaggctctgcattccctgagattctagagcctctgatggtg 236

                                                                       
Query: 63  ggttcagaaagagctgcccctcgctggag--------------ggaggtgagacctggct 108
           |||||||||||||||||||||||||||||              |||||||||||||||||
Sbjct: 237 ggttcagaaagagctgcccctcgctggagtggaaattaccaagggaggtgagacctggct 296

                                                                       
Query: 109 tcaagtcctcttcctcctcagcaagcagtggccacaggacactggggtttacagctgcga 168
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 297 tcaagtcctcttcctcctcagcaagcagtggccacaggacattggggtttacagctgcga 356

                                                                       
Query: 169 tgacagcaatgccacagtggcatccaccacggcacaaagcccacgggtgcatatgagaga 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 357 tgacagcaatgccacagtggcatccaccacggcacaaagcccacgggtgcaaatgagaga 416

                                                                       
Query: 229 gcacactgttcattccaggcct------------tgcatcagagtcagatctaggctccg 276
           ||||||||||||||||||||||            ||||||||||||||||||||||||||
Sbjct: 417 gcacactgttcattccaggcctgtatacgcaccttgcatcagagtcagatctaggctccg 476

                                                                       
Query: 277 tccggtaacactgtggacaggtgagcgagtgaggtcccaaggcaggtggcgatagacagc 336
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tccggcaacactgtggacaggtgagcgagtgaggtcccaaggcaggtggcgatagacagc 536

                                                                       
Query: 337 cagaacatgcccatcactgccttacatctgccgatcagctcagtgtaggtcgtccccttg 396
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 537 cagaacatgcc-atcactgccttacatctgccgatcagctcagtgtaggttgtccccttg 595

                                                                       
Query: 397 gtgggctacatggggatggaccagaggaggccaagagctgaagtggaaagggatatagag 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gtgggctacatggggatggaccagaggaggccaagagctgaagtggaaagggatatagag 655

                                                                       
Query: 457 tcagcaggtcttcctataggagtgagcactggacagcagtgtgggaagtcataggtttag 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcagcaggtcttcctataggagtgagcactggacagcagtgtgggaagtcataggtttag 715

                                                                       
Query: 517 gctgcagccacccccagtggggaccaccaacagggaccccccaacagcatcgccttggaa 576
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 716 gctgcagccacccccagtggggaccaccaacaaggaccccc-aacagcatcgccttggaa 774

                                                                       
Query: 577 gtgccagggaggcagaaccttgggctctacctccagcatcctgaaatgctcccaagactg 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gtgccagggaggcagaaccttgggctctacctccagcatcctgaaatgctcccaagactg 834

                                                                       
Query: 637 cagtcaccaaactctaaggatgtcaagactcctaaggagagtgtggagccatattataaa 696
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 cagtcaccaaactctaaggatgtcaagactcctaaggagagtgtggagccatattataaa 894

               
Query: 697 cgtg 700
           ||||
Sbjct: 895 cgtg 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1098
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1088
Effective search space:   750720
Effective search space used:   750720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no137_l17.g1 MSMg01no137_l17.g1 CHROMAT_FILE:
MSMg01no137_l17.g1 PHD_FILE: MSMg01no137_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:32 2005
         (651 letters)



>mm_chr17_26860451_26861501
          Length = 1051

 Score =  996 bits (515), Expect = 0.0
 Identities = 545/555 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgtcactgcttagatgcctatgtgtatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caggacagccagggctacacagagaaaccctgtcactgcttagatgcctatgtgtatagg 496

                                                                       
Query: 61  aaacaagacaaaccaatttcatgcctggggctagtggtgagagaagagggataactacaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 495 aaacaagacaaaccaatttcatgcctggggccagtggtgagagaagagggataactacaa 436

                                                                       
Query: 121 aagaggcactatgtacagaatagcagatttagtcacagcagtggctagatggtagtattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aagaggcactatgtacagaatagcagatttagtcacagcagtggctagatggtagtattt 376

                                                                       
Query: 181 attaaagctcaaaattctgttaactttcttctatttttttcttggtaggggaagtaggaa 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 375 attaaagctcaaaattctgtgaactttcttctatttttttcttggtaggggaagtaggaa 316

                                                                       
Query: 241 agagcagtgttgaatctgaatgaagatttatttataagctattctttaataatgatgatt 300
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 315 agagcagtgttgaatctgaatgaagatttatttgtaaggtattctttaataatgatgatt 256

                                                                       
Query: 301 ttaaagaagtatctatctgcagatggtggcacatgcctgtaatcttagcacttagagact 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttaaagaagtatctatctgcaaatggtggcacatgcctgtaatcttagcacttagagact 196

                                                                       
Query: 361 cagaagggtggattgccatgagttcaaggacagcttgggctacagaatgtttcagaccga 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 195 cagaagggtggattgccatgagttcaaggacagcttgggctaaagaatgtttcagaccga 136

                                                                       
Query: 421 tctgggttacattatgagtccttctttcaaaaagcaactaaggtatatgtagcggcacac 480
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 135 cctgggttacattatgagtcctcctttcaaaaagcaactaaggtatatgtagtggcacac 76

                                                                       
Query: 481 tcctttaatcccagtcctcagaggagaggtgaatttcaatgagttcttagccagcctgat 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 75  tcctttaatcccagtcctcagaggagaggtgaatttcagtgagttcttagccagcctgat 16

                          
Query: 541 ccacaagtgatcatg 555
           |||||||||||||||
Sbjct: 15  ccacaagtgatcatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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