Query= MSMg01no137_n04.b1 MSMg01no137_n04.b1 CHROMAT_FILE:
MSMg01no137_n04.b1 PHD_FILE: MSMg01no137_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:39 2005
(373 letters)
>mm_chr17_12826923_12827698
Length = 776
Score = 665 bits (344), Expect = 0.0
Identities = 364/372 (97%), Gaps = 5/372 (1%)
Strand = Plus / Plus
Query: 6 gaattccactagtctc-gaaatgactattttctaaaagcaagcatttaccaacagtgttc 64
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccactagcc-cagaaatgactattttctaaaagcaagcatttaccaacagtgttc 264
Query: 65 aagtggccactgttgatttgtacactatgacatcctgtaacagctggttctgggatggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtggccactgttgatttgtacactatgacatcctgtaacagctggttctgggatggag 324
Query: 125 gctgctgcaagatgtctttgctttaatagtttgctgtgctggaaaccagtctggctgtag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgctgcaagatgtctttgctttaatagtttgctgtgctggaaaccagtctggctgtag 384
Query: 185 catgagcttccagaagaatggaaggtgtctgctccattgtgtggaggttcaccaggtatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgagcttccagaagaatggaaggtgtctgctccattgtgtggaggttcaccaggtatt 444
Query: 245 tccctacaatctcctcactcttccaagagaagacctcaacattcagttgcatgggggggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccctacaatctcctcactcttccaagagaagacctcaacattcagttgcatgggggggg 504
Query: 305 gg---tgcagatatggtgtcttgatttagactgatgtgtaccaagttggagattctggct 361
|| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 505 gggggtgcagatatggtgtcttgatttagactggtgtgtaccaagtcggagattctggct 564
Query: 362 tctcttctgcag 373
||||||||||||
Sbjct: 565 tctcttctgcag 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 776
Length adjustment: 9
Effective length of query: 364
Effective length of database: 767
Effective search space: 279188
Effective search space used: 279188
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_n04.g1 MSMg01no137_n04.g1 CHROMAT_FILE:
MSMg01no137_n04.g1 PHD_FILE: MSMg01no137_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:39 2005
(628 letters)
>mm_chr17_12926333_12927360
Length = 1028
Score = 936 bits (484), Expect = 0.0
Identities = 501/514 (97%), Gaps = 12/514 (2%)
Strand = Plus / Minus
Query: 1 ctggggtgctgcttctgtgacgtgtgctttaaaatcatctgtgacgttttgcagactccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctggggtgctgcttctgtgacgtgtgctttaaaatcatctgtgacgttttgcagactccc 455
Query: 61 ttcgggaccccagcacacagctgagagtctgtcctgctggcactgctgcctgtctgctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttcgggaccccagcacacagctgagagtctgtcctgctggcactgctgcctgtctgctga 395
Query: 121 aggggaaccaggcatttgacgttggccgacccaaggaggggctgaagctgttgagcaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aggggaaccaggcatttgacgttggccgacccaaggaggggctgaagctgttgagcaagg 335
Query: 181 acaggttagtctgtgaccaccatggtggctcattttaggtcctcaacaagagaacctgtc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 334 acaggttagtctgtgaccaccatggtggctcattttaggtcctcaacaagagaacctgcc 275
Query: 241 ttatagccagactaatagagaagagaagggagtgtgagcttggtaatgggtggctggcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttatagccagactaatagagaagagaagggagtgtgagcttggtaatgggtggctggcat 215
Query: 301 gatcaaagaaggca------------gtgtgtgtgtgtgtgtgtgtgaaaatgccattgt 348
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 214 gatcaaagaaggcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaatgccattgt 155
Query: 349 gagacccattgttttgtacaattaataactggtaaattaatactggtaaatacaactaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gagacccattgttttgtacaattaataactggtaaattaatactggtaaatacaactaat 95
Query: 409 actgagaaaagatacaagaaagaaagactttgacttcttgggaggaaagcatgttccatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 actgagaaaagatacaagaaagaaagactttgacttcttgggaggaaagcatgttccatt 35
Query: 469 tccaacaggcgtattggtcattgtctggtcttag 502
||||||||||||||||||||||||||||||||||
Sbjct: 34 tccaacaggcgtattggtcattgtctggtcttag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
