Query= MSMg01no138_b02.b1 MSMg01no138_b02.b1 CHROMAT_FILE:
MSMg01no138_b02.b1 PHD_FILE: MSMg01no138_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:59 2005
(485 letters)
>mm_chr17_28899804_28900688
Length = 885
Score = 868 bits (449), Expect = 0.0
Identities = 476/485 (98%), Gaps = 2/485 (0%)
Strand = Plus / Minus
Query: 2 ggaattccagccctgacgca-gttctctggggcttggccagccagtctgacccaactctg 60
||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggaatcccagccctga-ggaggttctctggggcttggccagccagtctgacccaactctg 516
Query: 61 gagtaccaggttcagtgagagaccttgtataaataacgatatctcagcaataaaggctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gagtaccaggttcagtgagagaccttgtataaataacgatatctcagcaataaaggctcc 456
Query: 121 gataggagctgggtctcgagaaccacacagggagagaagagaaccaactctcaaaggatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 455 gataggagctgggtctcgagaaccacacagggagagaagagaaccaactctcaaagaatg 396
Query: 181 tcctctggcttctacacggtgtcacaagcatctctgccacagacagacacagagacagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcctctggcttctacacggtgtcacaagcatctctgccacagacagacacagagacagac 336
Query: 241 ccacaaatgaatgtaactctttttaaattacaaaaaggcactggaaagatggctcagtga 300
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 335 ccacaaatgaatgtaactctttttaaattacaaaaaggcgctggagagatggctcagtga 276
Query: 301 tcagctaagagcatttttttcttgcaggggacctaggttcagtccttagcttccatatca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 275 tcagctaagagcatttttttcttgcaggggacctaggttcagtccttagcttccgtatca 216
Query: 361 aacatacttcagctctaatgcatctcacccctcatgcagccttcatgggcacatgcacgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aacatacttcagctctaatgcatctcacccctcatgcagccttcatgggcacatgcacgt 156
Query: 421 gtgtggtacacatacagccaagtggaacatgtgcacacacacacatataaaagaaatgct 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 155 gtgtggtacacatacagccaagaggaacatgtgcacacacacacatataaaagaaatgct 96
Query: 481 attac 485
|||||
Sbjct: 95 attac 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_b02.g1 MSMg01no138_b02.g1 CHROMAT_FILE:
MSMg01no138_b02.g1 PHD_FILE: MSMg01no138_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:59 2005
(385 letters)
>mm_chr17_28769314_28770098
Length = 785
Score = 716 bits (370), Expect = 0.0
Identities = 382/386 (98%), Gaps = 2/386 (0%)
Strand = Plus / Plus
Query: 1 ggccagtgagaaaatctgtctcaagcaaacagggttggaaag-acctgtggccagaggta 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ggccagtgagaaaatctgtctcaagcaaacagggttggaaagtacctgtggccagaggta 260
Query: 60 tcaaaggcatcttttcccaaaaggagaagtctcaccagagtgaggctctaatagttggag 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tcaaaggcatcttttcccaaaaggagaagtctcac-agagtgaggctctaatagttggag 319
Query: 120 tacaaactaagtagaaattcttagtgacatttgcgcacagtcctgtctgagactcttcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacaaactaagtagaaattcttagtgacatttgcgcacagtcctgtctgagactcttcct 379
Query: 180 ctggataaaaggacagttgccttcatagccctgactcacggacaggcagtgggcagtgag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctggataaaaggacagttgccttcatagccctgactcacggacaggcagtgggcagtgag 439
Query: 240 caaacacagtgtctatacagagtctatgccatcctatgcaaacaggacctgtctttagtc 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catacacagtgtctatacagagtctatgccatcctatgcaaacaggacctgtctttagtc 499
Query: 300 ccaacccttccccttcccctcttggtgacacaagccttcattcttacctgcccagaagtg 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 ccaacccttccccttcccctcttggtgacacaagccttcatttttacctgcccagaagtg 559
Query: 360 tggactcaccttgaacccctgctaca 385
||||||||||||||||||||||||||
Sbjct: 560 tggactcaccttgaacccctgctaca 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
