NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAGCCTTCCCCTACATAGTGAGTTCCCAGTCAGCAAGGGC
TAAATAGTAAAACCCTATATAGACAAATAAACAGGAACAAAAAAATATTG
ATCTCTTCAACGTGTTTGTTTACCATTTTATTGTGGCTCATAATGTTGTC
TTATGTAGAATACTCTGCCATCCCCATATCTAAGTTGTCTGTTGGTTCAG
TTTTCATCTTGTGACTGAACACAATGTAATTTAAAAAGAGGATTTTTTTT
TATTTTGGTTTACAATTTCCAAGATTGGAGAAAAAGGTTGCTTGGCTCTG
TTACTGTGGCCTGTTGTGAGGCCAAGCACCATGGGAGAAGGACATGGAAA
GTGAGAACTCTTATCTCATAACAGTCAGAAAGCAGAAAGAGCTCAGAGGC
AGAACACAATATGACCACAATAATGATATGGCCTCAGTGACATACTTTCT
CCAGTTAGACCGTTCTCCAAAAGTTTCCCAGGCCTTCCCCAATAGATTCA
CCAGCTGAGGACCAAGCCTTCAAACCTTAAAACAGATTTTACAATTTTAT
TACTCAGTTAACTGTTTTTCCATTTATAAGTCATGGGTTCCGTGATAAGA
AGGGTCAGTGGTTAAGAGCATTTGCCACCATAGCAGATGAACAAATTTGA
A

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAACACCGAATGGCAG
AGAAGAACCTGAAAAAATGTTTAACATTCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATTCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCAGTTCCTTATAAAAGTGGACATAGTACTACCGGAGTATCC
AGCAATACCTCTCCTGGACTATATCCAGAAGATGCCCCAACTGGTATGAA
AGACACATGCTTTACTATGTTCAGAGCAGCCTTAATTATAATAGCCAGAA
GTTGGAAAGAACCCAGATGCCCCTCAACAGAGAAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTAGAGGGCATCATCCTGAGTG
AGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCATTGATAAGT
GGATATTAGCCCGAAACGTACGATACCCAAGATATAAGATACAATTTG

Query= MSMg01no138_i12.b1 MSMg01no138_i12.b1 CHROMAT_FILE:
MSMg01no138_i12.b1 PHD_FILE: MSMg01no138_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:36 2005
         (613 letters)



>mm_chr17_41025012_41026024
          Length = 1013

 Score = 1110 bits (574), Expect = 0.0
 Identities = 601/612 (98%), Gaps = 6/612 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaag-cct--tcccctacatagtgagttcccagtcagcaagggctaaatagtaa 61
           |||||||||| |||  |   ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 651 gaattcaaagccctgat---ctacacagtgagttcccagtcagcaagggctaaatagtaa 595

                                                                       
Query: 62  aaccctatatagacaaataaacaggaacaaaaaaatattgatctcttcaacgtgtttgtt 121
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 594 aaccctatatagacaaataaacaggaacaaaaaaatattgatctctttaatgtgtttgtt 535

                                                                       
Query: 122 taccattttattgtggctcataatgttgtcttatgtagaatactctgccatccccatatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 taccattttattgtggctcataatgttgtcttatgtagaatactctgccatccccatatc 475

                                                                       
Query: 182 taagttgtctgttggttcagttttcatcttgtgactgaacacaatgtaatttaaaaagag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 taagttgtctgttggttcagttttcatcttgtgactgaacacaatgtaatttaaaaagag 415

                                                                       
Query: 242 gatttttttttattttggtttacaatttccaagattggagaaaaaggttgcttggctctg 301
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 414 gatttttttttattttggtttacaatttccaaggttggagaaaaaggttgcttggctctg 355

                                                                       
Query: 302 ttactgtggcctgttgtgaggccaagcaccatgggagaaggacatggaaagtgagaactc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttactgtggcctgttgtgaggccaagcaccatgggagaaggacatggaaagtgagaactc 295

                                                                       
Query: 362 ttatctcataacagtcagaaagcagaaagagctcagaggcagaacacaatatgaccacaa 421
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttatctcatagcagtcagaaagcagaaagagctcagaggcagaacacaatatgaccacaa 235

                                                                       
Query: 422 taatgatatggcctcagtgacatactttctccagttagaccgttctccaaaagtttccca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taatgatatggcctcagtgacatactttctccagttagaccgttctccaaaagtttccca 175

                                                                       
Query: 482 ggccttccccaatagattcaccagctgaggaccaagccttcaaaccttaaaacagatttt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ggccttccccaatagattcaccagctgaggaccaagccttcaaaccttaaaacagatttt 115

                                                                       
Query: 542 acaattttattactcagttaactgtttttccatttataagtcatgggttccgtgataaga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 acaattttattactcagttaactgtttttccatttataagtcatgggttccgtgataaga 55

                       
Query: 602 agggtcagtggt 613
           ||||||||||||
Sbjct: 54  agggtcagtggt 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)