BAC Information

Click to search

BAC

Clone NameMSMg01-138K21
Chromosome17 (Build37)
Map Location 30,363,286 - 30,493,287
singlet/doubletdoublet
Overlap geneBtbd9
Upstream geneCpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
Downstream geneEG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138K21.T7 (MSMg01no138_k21.b1)MSMg01-138K21.TJ (MSMg01no138_k21.g1)
ACCAG344285AG344286
length718775
length of high quality
(start - end)
279 (44 - 322)170 (77 - 246)
definitionCHROMAT_FILE: MSMg01no138_k21.b1 PHD_FILE: MSMg01no138_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:47 2005CHROMAT_FILE: MSMg01no138_k21.g1 PHD_FILE: MSMg01no138_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,363,286 - 30,363,561)(30,493,121 - 30,493,287)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGCTGGTATACACAGTGGCTGTCCCCTTCCTTACCTTTGCCTTAG
CAGGGTTCTTACATGAAATCTCTCCTGGTCTGTGGCGTACGGAAAGGGGA
TCCTACTATCTGAGATCCTTGGTGTCCTTTAGCCCACTGTGACGTGCATC
CAACATGGATGGGACCACTGTGTTGACCGCCAGTTCTTCTGTGGATAGGT
GGGAACTGGGCCAACAGGGAGGAGAAGCAGGGCTTCCTAAAGGACTGCAG
AAGGCTGGAGGGAAGCATGCTCATATGTGTGACTAAGAGACTAGAACCTC
TACAGATGGAGCAGCTGCCATTGCCCAGAGCTGCCTAGATTTAAGGTAAA
GGGGGAGTTACCACATCACACCCGTGCTAAGCCTCTGGATGAAGAGGGCC
TGGCTGGACACAGTCCAGTCATGGGCACAGACCCCTCCTCAGTATCTGCC
CTCTGTTATTCTAAGCCAGCTGGATGTTTGAGGGTTAAGGCAGAATCTAC
CATGGAGGCTGAGACCTTGTTATCTCATGGGCTCTAGGCTGTAGAGACTA
CAGAGAAGTCCCTACAAGGAGCGTCTCAGCCACATCCATACTTGACTTAG
ACACCCTGTCCCCATTCTGGCTGCTCCCAACTCCCACTCTGGCAAAGTAT
CATGGTGCTCATGGTCTC
NCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGTACTTGTGTGTGAGAATG
CCTTTAGGTCTTACCCCATAACGCAGCGGTTCTCTCGTGAATGGGGGACC
AAGATGGCTGGTGCTTTATGTGCTTCTCAGCTCAGTCCTGTAATCAAAGG
AAAGGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNACACCC
CCCCATCATTTTTTTCATTCTCACTCTCATTCTTTTCAACCCATACCTTA
CTTACACATACCCCCNCAACCANAATTTTTTTTTTTTTCCCACAACCTAC
CCCACCTTTCTCTTTATTATTATTCCCCCCCCCTATTCCTCTATTTTATT
TTTTATTTTTTCTTTATTTTTGTGTGCCCCCCCTTGTTGTTTTTGTATAT
TTTTATTTATTCCTTTTTCTTTATCTTTCTTTACTACCTTTTATATTTTT
TTTATTTTTTTTCTCTTTTCTTTTTTTTCTTAATTCTCTTAATTTATATT
CTTTGCTTAACCATTCCTCCTCTCAATTATTATTTCTTGACATATCTTCT
TCTCCCCGCCCTTATACGTAATATTTTCTTTAATCTTATTTAATTCTTTC
GCTTGGTTTTTTTTTTCTTCCATATTATTATGTCTTACATTTTTTTTATA
TACTTACTTTCCTTTCTTTTAATTAATTAATTTTTCTTATTATTAACAAT
ATCTATATTTTTTCATTTTTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_k21.b1 MSMg01no138_k21.b1 CHROMAT_FILE:
MSMg01no138_k21.b1 PHD_FILE: MSMg01no138_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:47 2005
         (279 letters)



>mm_chr17_30363083_30363761
          Length = 679

 Score =  495 bits (256), Expect = e-144
 Identities = 271/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggctggtatacacagtggctgtccccttccttacctttgccttagcagggt 63
           |||||||||||||| || | |||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 ggaattccaggctgttagagacagtggctgtccccttcctgacctttgccttagcagggt 263

                                                                       
Query: 64  tcttacatgaaatctctcctggtctgtggcgtacggaaaggggatcctactatctgagat 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttacatgaaatctctcctagtctgtggcgtacggaaaggggatcctactatctgagat 323

                                                                       
Query: 124 ccttggtgtcctttagcccactgtgacgtgcatccaacatggatgggaccactgtgttga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccttggtgtcctttagcccactgtgacgtgcatccaacatggatgggaccactgtgttga 383

                                                                       
Query: 184 ccgccagttcttctgtggataggtgggaactgggccaacagggaggagaagcagggcttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccgccagttcttctgtggataggtgggaactgggccaacagggaggagaagcagggcttc 443

                                               
Query: 244 ctaaaggactgcagaaggctggagggaagcatgctc 279
           ||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaaaggactgcagaaggctggagggaagcatgctc 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no138_k21.g1 MSMg01no138_k21.g1 CHROMAT_FILE:
MSMg01no138_k21.g1 PHD_FILE: MSMg01no138_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:47 2005
         (170 letters)



>mm_chr17_30492957_30493526
          Length = 570

 Score =  323 bits (167), Expect = 4e-93
 Identities = 167/167 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagagtacttgtgtgtgagaatgcctttaggtcttaccccataacgcagcggttctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ccagagtacttgtgtgtgagaatgcctttaggtcttaccccataacgcagcggttctctc 272

                                                                       
Query: 61  gtgaatgggggaccaagatggctggtgctttatgtgcttctcagctcagtcctgtaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtgaatgggggaccaagatggctggtgctttatgtgcttctcagctcagtcctgtaatca 212

                                                          
Query: 121 aaggaaagggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aaggaaagggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)