BAC Information

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BAC

Clone NameMSMg01-140B03
Chromosome17 (Build37)
Map Location 60,119,621 - 60,120,206
singlet/doubletsinglet
Overlap genenone
Upstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140B03.T7 (MSMg01no140_b03.b1)MSMg01-140B03.TJ (MSMg01no140_b03.g1)
ACCAG345311AG345312
length717716
length of high quality
(start - end)
207 (72 - 278)586 (76 - 661)
definitionCHROMAT_FILE: MSMg01no140_b03.b1 PHD_FILE: MSMg01no140_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:41 2005CHROMAT_FILE: MSMg01no140_b03.g1 PHD_FILE: MSMg01no140_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACCCCTACGCCCCTCACCCCATAAAAACCCCTAGCTTTTGAG
CCTCGTGGCCGATATCCCTTATCTCCTGTGTGGGATACATGTCGGTCTGA
GCTCCGTCATTAAACTACCTCTTGTATTTACATCAAGACGGTCTATTCGT
GATTTTTTGGGTGCATGCCGAATCGGGAATTGAGTGGGGGTTTACCCACT
AGGTTCTATCAGTACTATCATTGAGCTGTAGCTTATTCTTATTTTGTAAG
TCAGGTAGCTATAAGGGAGGTTTTAAAGACAAATTTACACAAAATTTCTG
TAGGCAAGTAGAAGGACTAAAGGAGCTGAAGCAGGTTTCAACCCCATTGG
AAGAAGAACAATATCGACCAACCAGACACCCCAGAGCTCCCTGGAACTAA
ACCACCAACCATGGTAGGAGGAACCCATGGCTCCAGCTGCATATATAACA
GAGGAATGCCTTATCTGGCATCAAAGGGAGGGGAGTCCCTGGGACCTGTG
GAGGCTCAGTGCCCCAGCTTATGGGAATGCTAGTGTGCTGAGGCAGGAGT
GGGTGGTGCGTAAGAACAGGGAGTATGGAGAGAGACTCCCATGTTTTTGT
AATCCTTACTTTTATAGTATTTACACCTCACTCTTATTTCCCCTTTATTC
CCCCCCTTCTTATATTC
NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTACAATGCATCAAACATATAG
ATTATTTGTAATTAATTATCAGCTTCTAGAATTCATTGACTATATATAAT
TATATTTTTCAGCTTTGCATTATTAAGTGACAAGGATGAATACAATTGTC
TCCAAAATCCCTGTCACAAACCCCAACTTTCCTGCCTTTGTTTATGCAGA
GAAAAATAAAAGTGATTCTCAATATGATTTTATCTGAAAAAAAGCACAAG
ATATTTATGAGTTATATGTATGATTTATACTCCTGGCCATCATCCTAACC
AGGAGACACTGATTCTCTGCAATTTGCTCTAAGGCTGCAGCAGCAGAAAG
AGGAGTCTATCAAAGAAATCATTTATGCCTCACTCATTGCTAATGTCAGC
AGAATGGTCATTTTGCCCATTTCACAGATGAGGAAATAAGTGACAAATGA
AATTAATTTTCTCAACCTTGAATATCATGGTCGAAATTTTTGTTTCTTTA
AAGAATATCCCTTTATTAATCTTAAGGCAAAATTTCTCATCTGGGAATAT
TTATGTCTATGAGCCTAACTCTATGATGAGTATTTTTGGAGAGGTGACTG
AGAAAAAGGGTCTGGAATATACTAAAGATGGTTTTGTATTTTGCTGTACT
TTTCATATGCATTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_b03.g1 MSMg01no140_b03.g1 CHROMAT_FILE:
MSMg01no140_b03.g1 PHD_FILE: MSMg01no140_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:41 2005
         (586 letters)



>mm_chr17_60119421_60120406
          Length = 986

 Score = 1048 bits (542), Expect = 0.0
 Identities = 575/586 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattacaatgcatcaaacatatagattatttgtaattaattatcagcttctagaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattacaatgcatcaaacatatagattatttgtaattaattatcagcttctagaattca 260

                                                                       
Query: 61  ttgactatatataattatatttttcagctttgcattattaagtgacaaggatgaatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgactatatataattatatttttcagctttgcattattaagtgacaaggatgaatacaa 320

                                                                       
Query: 121 ttgtctccaaaatccctgtcacaaaccccaactttcctgcctttgtttatgcagagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtctccaaaatccctgtcacaaaccccaactttcctgcctttgtttatgcagagaaaa 380

                                                                       
Query: 181 ataaaagtgattctcaatatgattttatctgaaaaaaagcacaagatatttatgagttat 240
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ataaaagtgattctcaatataattttatctgaaaaaaagcacaagatatttatgagttgt 440

                                                                       
Query: 241 atgtatgatttatactcctggccatcatcctaaccaggagacactgattctctgcaattt 300
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 441 atgtatgatttatactcctggccatcatcctaaccaggagtcaccgattctctgcaattt 500

                                                                       
Query: 301 gctctaaggctgcagcagcagaaagaggagtctatcaaagaaatcatttatgcctcactc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatctaaggctgcagcagcagaaagaggagtctatcaaagaaatcatttatgcctcactc 560

                                                                       
Query: 361 attgctaatgtcagcagaatggtcattttgcccatttcacagatgaggaaataagtgaca 420
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 561 attgctaaggtcagcagaatggtcattttgcccacttcacagatgaggaaataagcgaca 620

                                                                       
Query: 421 aatgaaattaattttctcaaccttgaatatcatggtcgaaatttttgtttctttaaagaa 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgaaattaattttcttaaccttgaatatcatggtcgaaatttttgtttctttaaagaa 680

                                                                       
Query: 481 tatccctttattaatcttaaggcaaaatttctcatctgggaatatttatgtctatgagcc 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 tatccctttattaatcttaaggcaaaatttctcatctgggaatatttacgtctatgagcc 740

                                                         
Query: 541 taactctatgatgagtatttttggagaggtgactgagaaaaagggt 586
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 taactctatgatgagtatttttggagaggtgactgggaaaaagggt 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)