BAC Information

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BAC

Clone NameMSMg01-140I03
Chromosome17 (Build37)
Map Location 56,369,458 - 56,369,701
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9
Downstream geneLOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140I03.T7 (MSMg01no140_i03.b1)MSMg01-140I03.TJ (MSMg01no140_i03.g1)
ACCAG345624AG345625
length709698
length of high quality
(start - end)
246 (82 - 327)36 (273 - 308)
definitionCHROMAT_FILE: MSMg01no140_i03.b1 PHD_FILE: MSMg01no140_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:15 2005CHROMAT_FILE: MSMg01no140_i03.g1 PHD_FILE: MSMg01no140_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXATCCAAAA
GAGGATCCGCGGAATTCTGCTGTGCTGAGACAAGCCTGCTCCCTACCCCT
CTGGGGGAGTCTGATGCTCACGTGTGCACCCCAAGGTTGCCTCTTTCCAT
CACGAGACAGATGCACGTGTACCACCCACATGGTCCCCAGGCTGGAAAAC
TCCACACAGAACATCCTTGTCACTACGCTGGTCACCATGGTTACCAAAAG
ATGCTGTCTCTGTTTGCAAGGCGCACGCGCTCTCTCTCCCTCTCCCTCTC
CCTCCGTCCAACCCAATTTGAAGTTTCATAATAAAAATTTCCAGAGTTGA
CTTTAATGGAAGTAGAAACACTTCACATGGAATATTCTAGAAGGGGCAGT
TAACACCGGAATAAACCAAGCCCAACCATTGCCATCACTGAATCCCTCTT
TCGGGCATGGAACAAGTGGAAAAAGGAATTTGGGGGTTCCACGCAGCCCC
CAAAGGGCGCTATGGGCCCCCCTAAAAGGGGGGTCCCCGAATTAGGTCCT
CCGCCCCGGGGTGCGGTACTCGGTGGGATTTCCTTCCTTCATTCTTTTTT
TTTTTCTTTGCGGGGGTACAATTTTGCCTCCCTTCTTTCCCCCCCCCTCG
TGTATAAACCCTTCTACCCACCATCCTTTTCTTTCCTTTTCTCATCCCAC
CCAGTTCAC
NCTTACCCTCCGATGCAGTGGGTAGGCCTGGNNGGTGCCNGGTTCGAACC
NCNGAGGNGANANNANAGAACTTACGNNAGGGAGGGCNNNGNAGACCAGG
NNGGCCCCGAACCCAGAAANCCGCCCGCCCCCGCCNCCCGAGNGCNGGGA
NNAAAGGCAGGNGCCACCAGGCCCAGCGGACACCGGAGNACAANGAAGAC
ACACACGCGGCGGCCCAGGCCCAGCACAGAGGGCCAACCCAGGCCCCCCA
GAACCGCAAACTTTTTTTAGTTGCAGGAGGCAAGGAGCAGGATGGACACC
TGGAGTGAGGGGCCGAGCCCAGCCATGTTTTATATTTTCGCAGAAAACGG
AGGCAGGAGCCACCCCAAACCTGCCCCCCACCCCCCCACCACGAAAAAGG
GAAAAGGGNACCAAGGGAGACCGAGCACACAACAGAAAGGAGCAGGCCAG
CACGGGCAACCCACCCCCACGAGCAGCGCAACGGGCAACGGCGACGGCCC
CACGAACGCCAGCAACGGACCCGCCCAGCCACGGAACAGCCAGGGCACCA
CGCCGACAACCCCAAGCACCGCGGCGCACGAACCCCCACGCCCGCCCCCA
ACGGACAGACGCACCGACCGGCGAGACCCGCCAGCCCCGGGCCAAGCCCG
CCCACGGCCCAAGCACTTTTTTTTTATTCGCGGCGCCCTGTCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_i03.b1 MSMg01no140_i03.b1 CHROMAT_FILE:
MSMg01no140_i03.b1 PHD_FILE: MSMg01no140_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:15 2005
         (246 letters)



>mm_chr17_56369256_56369901
          Length = 646

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gcctgctccctacccctctgggggagtctgatgctcacgtgtgcaccccaaggttgcctc 62
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gcctgccccctacccctctgggggagtctgatgctcacgtgtgcaccccaaggttgcctc 262

                                                                       
Query: 63  tttccatcacgagacagatgcacgtgtaccacccacatggtccccaggctggaaaactcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttccatcacgagacagatgcacgtgtaccacccacatggtccccaggctggaaaactcc 322

                                                                       
Query: 123 acacagaacatccttgtcactacgctggtcaccatggttaccaaaagatgctgtctctgt 182
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acacagaacatccttgtcaccacgctggtcaccatggttaccaaaagatgctgtctctgt 382

                                                                       
Query: 183 ttgcaaggcgcacgcgctctctctccctctccctctccctccgtccaacccaatttgaag 242
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgcaaggcgcacgtgctctctctccctctccctctccctccgtccaacccaatttgaag 442

               
Query: 243 tttc 246
           ||||
Sbjct: 443 tttc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)