BAC Information

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BAC

Clone NameMSMg01-141D10
Chromosome17 (Build37)
Map Location 38,501,475 - 38,502,224
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136
Downstream geneLOC626985, LOC100043297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141D10.T7 (MSMg01no141_d10.b1)MSMg01-141D10.TJ (MSMg01no141_d10.g1)
ACCAG346147AG346148
length1,2661,237
length of high quality
(start - end)
701 (90 - 790)756 (90 - 845)
definitionCHROMAT_FILE: MSMg01no141_d10.b1 PHD_FILE: MSMg01no141_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:21 2005CHROMAT_FILE: MSMg01no141_d10.g1 PHD_FILE: MSMg01no141_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTTCTTTNNNNGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTTTGTTCAGGTCTGACCCCTTTATGTTTATGGGATTATTT
GATTTTCTGAAGTCCACCCTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
ATCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTCCAGAAACTTTGGAGT
TTCATTAGGTCTCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCC
TTGACCCACTTAGATTTGAATTTAGTACAAGGAGATAAGTATGGATTGAT
CGCATTTTTCTACACGATAACAACTAGTTGTGCCAGCACCATTTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCA
AGTGACCATAGGTGTCTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAAT
TGCTCCTTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCTCCAGAAGTTC
TTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAG
ACGAATTTGCAAATTGCTCCTTCCAATTCGTTGAAGAGTTGAGTTGCAAT
TTTTGATGGGGATTGCAATGAATCTGTAGATTGCTTTTTGGCAAGATAGC
CATTTTTTACATGTTGATCCTGCCAATTCCTGAGCATGGAAGATCTTTCC
ATCTTCTGAGATCTTCCTTAAATTTCTTTCTTCAAAAATTTGAAGTTTTT
ATCATAACGATTCTTTTCCTTCCCTATATTAAAAGTCACGCCCAAAAATT
TTAAAATTATTTGTGGACATTTGAAAAGGGTGTTTGTTTCCCCTAATTTC
TTTCCTCGACCTGGTTTTATTCTTTGTAAAAAAAAAAAGGCCCCTTGACT
TTGGTTTGAAATTTTTATTTTAATATCCCCGCCTTCTCTTCCCCCAAAAT
TGTGTTTATTCCCCTCTTTAAAGAATTTCCCCTGGGTTAAAATTTTCTTG
TGCCCCTTTTATATATATCACTATCTATTCTTCTTCTCTTAAAGGAGGAA
TATTTGTTTATCTCCT
CCATTTTCTNTNNNAAGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGGTTTGTTAAAAACTTACTT
GATGCTTTTTGTACTTTTTTTCTTTTTCTTTTTTTTTTCTTTTTTTTCTT
TTCTTTTAAGATTCAAGGGGCCAAGGTCATAGGATAATCAAAAGGGAGCC
TGGGGTGGGCAATATTATATGCAAATAAAAGACTTGGCTTTCTTATGGTG
ATCTTTAGAAAGCTGTCTGAAGCAGAACACATGGCTGTCAGCTTTTACCC
ATGATTGACTTTCATTTTTTAGCCCTACCTTCTAAGTGAAATACCTAGAA
ATGCTACACAATATAAAGCAGAGAGACTTCTTTTTTTTATTACATATTTT
CCTCAATTACATTTCCAATGCTAGCCCAAAAGTCCCCCATGCCCTCCCCC
CCACTCCCCTACCCACCCATTCCCACTTTTTGGCCCTGGCATTCCCCTGT
ACTGGGGCATATAAAGTTTGCATGTCCAATGGGCTTCTTTTTCCAGTGAT
GGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTTTAAGGAAAA
AAATCTATTATGTTTATGTGTTTAACTTGATTGTAGGTTTTAAGTACCAT
AACAGATATCTGATGGCTAGAAGACAACATTGTGGGGTCTACTTTGGATT
CTTTATATGATTATCAGTGTTAGATTACCAGCTGTGCACACAATAGACAG
ATCCCACTGACCTATCTCACTGATGCTCAAATAAGATTAGTTGAATCATT
ACATCAGTAAAATACTGTCTTCTTTTCAGATTATAAACATTGTCATCTAA
GGATGGAGAAAACAAGACAATTTGAATAATAATACTATTTTCAAAAAAAA
AAAACCCAAAAACCAAAATAAAAAAAAAAACCCCCAAAAAACCACTATTA
GGGCAATCTTTTGGGGGAAAAGGGTTTGTTTATTGGCAGAAGAAAAAACT
TGTTCATAAAAATTTTTTAAAACCCCAAAGGAGGCCCAAAAATTGTCTCC
TGGGGAAAAATTTGGTGGTGCGTAACCCGAAGGAACCGAAGTTAAAGGCC
TAGGAAACCCCTTTTTACCCCAAAAGAGATTTTTTTCTCTTTTAAAAAAA
AAAAACTTGGGCCTTTTGGGATAGTGCACGTTCCTCCCCCCTCTCCCCCT
AAATGTGATTTTTTATAAACACATAGAGGGCACGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_d10.g1 MSMg01no141_d10.g1 CHROMAT_FILE:
MSMg01no141_d10.g1 PHD_FILE: MSMg01no141_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:22 2005
         (756 letters)



>mm_chr17_38501269_38502424
          Length = 1156

 Score = 1268 bits (656), Expect = 0.0
 Identities = 729/760 (95%), Gaps = 14/760 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacttacttgatgctttttgtacttt-ttttctttttcttttttttttcttttttttc 59
           |||||||||||||||||||||||| ||| |||| ||||||    ||||||||||||||| 
Sbjct: 207 aaaacttacttgatgctttttgtagtttattttttttttc----ttttttctttttttt- 261

                                                                       
Query: 60  ttttcttttaagattcaaggggccaaggtcataggataatcaaaagggagcctggggtgg 119
                |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 262 -----ttttaagactcaaggggccaaggtcataggataatcaaaaaggagcctggggtgg 316

                                                                       
Query: 120 gcaatattatatgcaaataaaagacttggctttcttatggtgatctttagaaagctgtct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcaatattatatgcaaataaaagacttggctttcttatggtgatctttagaaagctgtct 376

                                                                       
Query: 180 gaagcagaacacatggctgtcagcttttacccatgattgactttcattttttagccctac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 377 gaagcagaacacatggctgtcagcttttacccatgattgactttcatttttaagccctac 436

                                                                       
Query: 240 cttctaagtgaaatacctagaaatgctacacaatataaagcagagagacttc---ttttt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 437 cttctaagtgaaatacctagaaatgctacacaatataaagcagagagacttctttttttt 496

                                                                       
Query: 297 tttattacatattttcctcaattacatttccaatgctagcccaaaagtcccccatgccct 356
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 497 tttattacgtattttcctcaattacatttctaatgctagcccaaaagtcccccatgccct 556

                                                                       
Query: 357 cccccccactcccctacccacccattcccactttttggccctggcattcccctgtactgg 416
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 557 cccccccactcccctaccgacccactcccactttttggccctggcattcccctgtactgg 616

                                                                       
Query: 417 ggcatataaagtttgcatgtccaatgggcttctttttccagtgatggccgactaggccat 476
           ||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||
Sbjct: 617 ggcatataaagtttgcatgtccaatggacctctttttccagtgatgactgactaggccat 676

                                                                       
Query: 477 cttttgatacatatgcagctagagtttaaggaaaaaaatctattatgtttatgtgtttaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cttttgatacatatgcagctagagtttaaggaaaaaaatctattatgtttatgtgtttaa 736

                                                                       
Query: 537 cttgattgtaggttttaagtaccataacagatatctgatggctagaagacaacattgtgg 596
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttgattgtaggtttttagtgccataacagatatctgatggctagaagacaacattgtgg 796

                                                                       
Query: 597 ggtctactttggattctttatatgattatcagtgttagattaccagctgtgcacacaata 656
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 797 ggtctactttggattctttatatgatgatcagtgttagattaccagctgtgcacacaata 856

                                                                       
Query: 657 gacagatcccactgacctatctcactgatgctcaaataagattagttgaatcattacatc 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gacagatcccactgacctatctcactgatgctcaaataagattagttgaatcattacatc 916

                                                   
Query: 717 agtaaaatactgtcttcttttcagattataaacattgtca 756
           |||||||||||||||| |||||||||||||||||||||||
Sbjct: 917 agtaaaatactgtcttgttttcagattataaacattgtca 956


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1156
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1146
Effective search space:   854916
Effective search space used:   854916
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)