BAC Information

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BAC

Clone NameMSMg01-142K07
Chromosome17 (Build37)
Map Location 23,649,204 - 23,649,813
singlet/doubletsinglet
Overlap genenone
Upstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1
Downstream geneEG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142K07.T7 (MSMg01no142_k07.b1)MSMg01-142K07.TJ (MSMg01no142_k07.g1)
ACCAG347202AG347203
length1,2931,253
length of high quality
(start - end)
641 (92 - 732)596 (132 - 727)
definitionCHROMAT_FILE: MSMg01no142_k07.b1 PHD_FILE: MSMg01no142_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:35 2005CHROMAT_FILE: MSMg01no142_k07.g1 PHD_FILE: MSMg01no142_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCCTCTTTNNNNNNGGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGAGAGAGGGAATTGACCTATAAGTGCCAAAACATTTG
AAATGTAAATAAAATAATTTCCTTGAAATATCCTGAAAATTCCAATCATA
AGACAGTGAATTGAAATAAGTTTTAGCTGCCAGTTGGATGCTGGGAAGTA
AATTGTGGTCCTCTCTAAATGTAGCCAGGTCCCTTAAGTGTCCCTCAAGA
TTTAGGGTCTGAATGCTCATATCTGAGTAGGACTGTTCTGAAATTGTTTG
GTCACTTCAGTGAACTTTAGTATGAGATCATAACCTTCCCCTGTAGTCAT
CCTCAGTCCATTCCACTAGTATTTCTTCACAAAAATACTCACACTAAATG
AAGTCCTATGATTTATGATTTCAACTCAATCTTTGTGAAATTGTATTTGT
ATTTTGATTCTTTTTTAATGTTCTCTTTGAGATACTAAGATAGCTTAGAA
TTTAACACTATATGTTGTTCATGGAAAACGAGGTTTGATTTCAAGCACCT
ATACCATGGCTCACACTTTAGTTCTAGAAAATGTAAATTGTGTTAGCATT
TGGCAAGACACGTACACACAACAACACACACTAGAATTACACACATATTT
CATCACACACACACACACACACACACACACACACACATATATATATATAT
ATATATAATTTTATGTATAATATATAGACACATATATAATTTTACATAGT
TTATATATATATATTTACATTACATAATTACATAATTTTAGAAGAAATTT
AAGTTTCACTTTTTTTTTAATTAAATACTTTCTCCATTTACATTTCCAAA
GCTATCTCAAGAGTCCCCCATACCCTTCCTCTACATTCCCCCTAATTACC
AACACCCCCTTCTGGGCCCTTTGTGTCCCCTTGTTCTTAGGCTATTAAGT
TTGAATGAAAATATGTATCCCTTCTTTCCCATGGATGGTTGTTTATCCCT
TTTTTTTTTTTATATCTCTTCTTCAATCATCTAATCTCTGTTCTTCTGCT
CATTTTACTTATTTGTTTTCCCTCATTGTCTTTCTATACGCCTTTCTTTC
CTTCTTGTATCTTTTTCTCATTATCTTTAATGTTATCCCCTCTTGTCTTT
CTCCTTCTCCTTTTGCATCANCTCTTTCCTCTTTGATTTTCTTTATTCAT
TTTCCTCTANTATTCATCTCTATTTTCTACTTTTTTTCTCTTTCTTCCTT
TATTTCTCTCTATTTCCTTTTTTACTTTCTCTTTGATTTTCTC
CCCTTTTTTNNNNNAACATGCGAGCCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGAGCTCTGATCCCCATT
TTTTAATAGAGTTATTTGGCTTTCTGGAGTCTAACTTCTTGAGATTTTTG
TATATATTGGATATTATTCTTTTATCGGATGTAGAATTGGTAAAGATCTT
TTCCCAGTCTGTTGGTTGCCATTTTCTCCTATTGAGAGTGTCCTTTGCCC
TATTGAAGCTTTACAATTTTATGAGGTTACATTTGTCGATACTTGATCAT
AGAGCATAAGCCATTGGTTTTCTGTGGCTATGTGTTCCAGGTATTTTTTC
CTAATTTCTCTTCTATTAGATTCAGTGTATCGGGTTTCAGGTGGAGGTCC
TTGATCCACTTGTACTTAAGCTTTGTAGAAGGAGATAAGAATGGATCAAT
TGTATTCTCCTAAATGTTTACCATCAGTTTAACAAAGCACAATTTTTTTG
AAAATGTTTTCCTTTTTCCACTGGATGAATTTAGCTCCTGTGTCAAAGAT
CCAGTGATAATAGGTGTGTGGGTTCATTTGTGGGTCTTCAGTTCTAAACA
TTGATCTACATGTCCATCACTCTACCAATACCATGAAGTTTTTATCACTA
TTGCTCTGAAGAATAGCATGAGGTCAGGGATGCTGATCCCCCAGAAGCTC
TTTTTATTGTTGAAAATAGTTTTTGCTATCATGTAATTTAGTTTGCTATT
CAAAATTAATTTGAAAATGGCTCTTTCCAATTCTATGAAGAATTGAGTTG
AAATTTTCTTGGAGATTTTATTGAATCTGTAAATTGCTTTTCTGCAAAAT
GTCATTTTTACTATTTTAATTTTTGCCATACCCTGATCTAGGGATATCTT
TCCCTCTTCTGAGTTCTTCTTTAGATGGTTTTCTCCATAATTGTGAAATT
CTTTTTCATTCTTATTTTTTTTCTTGTTTGCTTCTAATCTTCCTCTATCT
ACTTTTATTTTTTTTTTCTCTTTCTCCATGCCATGCTTTCTCTTCCTTTT
CATTTTTTTTTTCTCTTTTTTTATCTTTTCTTCTTTTTACACTTCCTTCT
CTTTTTTTATTTTTTTTTTTTTTATCTTTTTTTCTTCTTCATTTTCTTCT
ATCTTATCTTTCATTCCTTTCTATATTTTGTCTATTGTCTCTTTCCCTTT
CTCATCCTTCTTACTCCTCTTTCTCTTCCTCCTCATATTTATATACATTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_k07.b1 MSMg01no142_k07.b1 CHROMAT_FILE:
MSMg01no142_k07.b1 PHD_FILE: MSMg01no142_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:35 2005
         (641 letters)



>mm_chr17_23648926_23649970
          Length = 1045

 Score =  487 bits (252), Expect = e-142
 Identities = 512/626 (81%), Gaps = 65/626 (10%)
 Strand = Plus / Minus

                                                                       
Query: 2   aacatttgaaatg----taaataaaataatttccttgaaatatcctgaaaattccaatca 57
           |||||||| ||||    ||||||||||||     || ||| ||  ||| ||||  |||||
Sbjct: 888 aacatttggaatgtaaataaataaaataa-----ttaaaaaataatgagaatttgaatca 834

                                                                       
Query: 58  taagacagtgaattgaaataagttttagctgccagttggatgctgggaagtaaa-ttgtg 116
           |||||||||||||||| |||| |||||||| ||| |||||||||| || ||||| || ||
Sbjct: 833 taagacagtgaattgacataatttttagctaccaattggatgctgagaggtaaactt-tg 775

                                                                       
Query: 117 gtcctctct-a-aatgtagccaggtcccttaagtgtccctca--ag-----attt----- 162
           |||||| || | ||  ||||||| |||||||||||||||| |  ||     ||||     
Sbjct: 774 gtcctccctgagaa--tagccagttcccttaagtgtcccttattagaactcatttgtccc 717

                                                                       
Query: 163 ----ag-----ggtctgaatgct---catatctgagtag-gactgttctgaaattgtttg 209
               ||      || ||||||||   |   ||| ||| | |||||||||||||||||  |
Sbjct: 716 tcaaagtttactgtttgaatgcttccc---tcttagt-gtgactgttctgaaattgtggg 661

                                                                       
Query: 210 gtcacttcagtgaactttagtatgagatcataaccttcccctgtagtcatcctcagtcca 269
           | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 660 gccacctcagtgaactttagtatgagatcataaccttcccctgtagtcatgctcagtcct 601

                                                                       
Query: 270 ttccactagtatttcttcacaaaaatactcacact-aaatgaagtcctatgatttatgat 328
           ||||| ||||||||||||||| || |||||||||| ||| ||||||||||||| ||||||
Sbjct: 600 ttccagtagtatttcttcacataagtactcacactaaaaagaagtcctatgatatatgat 541

                                                                       
Query: 329 ttcaactcaatctttgtgaaattgtatttgtattttgattcttttttaatgttctctttg 388
           |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 540 ttcaactcaatcttcgtgaaattgtatttgtattttgattcttttataatgttctcttgg 481

                                                                       
Query: 389 agatactaagatagcttagaatttaaca-ctatatgttgttcatg--gaa-aacgaggtt 444
           |||||||||||||||||||||||||||| | | ||||||||| ||  ||| ||| |||||
Sbjct: 480 agatactaagatagcttagaatttaacagc-acatgttgttcttggagaacaactaggtt 422

                                                                       
Query: 445 tgatttcaagcacctataccatggctcac----------actttagttctagaaaatgta 494
           |||||||||||||||||||||||| ||||          |||||||||||||||||| | 
Sbjct: 421 tgatttcaagcacctataccatggttcacactgcgtgtaactttagttctagaaaatctg 362

                                                                       
Query: 495 aattgtgttagcatttggcaagacacgtacacacaacaacacaca--ctagaattacaca 552
           |||||  ||||| | ||||||||||| || ||||||||||| |||  |  ||| ||||||
Sbjct: 361 aattgccttagcctatggcaagacacataaacacaacaacatacatgc--gaaatacaca 304

                                     
Query: 553 catatttcatcacacacacacacaca 578
           |||||||||||||| | |||||||||
Sbjct: 303 catatttcatcacata-acacacaca 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1045
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1035
Effective search space:   653085
Effective search space used:   653085
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)