BAC Information

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BAC

Clone NameMSMg01-144E04
Chromosome17 (Build37)
Map Location 10,678,704 - 10,679,267
singlet/doubletsinglet
Overlap genePacrg
Upstream geneEG667170, 4932702K14Rik, Qk, LOC675815
Downstream genePark2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144E04.T7 (MSMg01no144_e04.b1)MSMg01-144E04.TJ (MSMg01no144_e04.g1)
ACCAG348380AG348381
length710731
length of high quality
(start - end)
567 (45 - 611)332 (76 - 407)
definitionCHROMAT_FILE: MSMg01no144_e04.b1 PHD_FILE: MSMg01no144_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:02 2005CHROMAT_FILE: MSMg01no144_e04.g1 PHD_FILE: MSMg01no144_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTCTACGCAGGCAAACCGGGAGAACTGGGTCATCCTGTAAGCAA
GGTCTTAACGATGCAAGTGGAGCTAGACCCTGCTGTGTTGCTGTTCCTGT
CCTGGTAATTGGTGAGAGGTGTTCACTGCCCTCCTAAGAGAAAGAAGCTC
TTAGTTACAATCCTTATGAGATGACTCAGGCCAGGAGCCAGGAAACCTAC
ATAAAAACAATGTGAACAGAAATCCATACACAAGCATGAACATTCTTAAA
CTAAACGAGAAGTCCCCAAACACCTATGTTCACAGCTGTTCTCTGTAAGC
ACAGCCCTAGACAGGAGCCCAGAGATTCCTATCCTTGAGCCAAAGACTTG
AACATCTGGTCTCTGCCAAGAAGATAATAGGTAGGGAGTGAGCTGGCTGG
CAGCAAAGAGGTTCCAGCTAGATATGAGGAGCAGGCAGACCCTGCAGGAA
GATATTGAGCCTAATACACTGGGGTCGCTGGCTAAGGTCCACGTGGTGCT
CATCTGAAGACCCTTCCCGACAGCCCCAGGGACTTAAAGAATGCTCCTCA
CAACGTGCATTCACCCTAGAGCAGCCAAGCCTGATCTCTTCTCCCCCTTT
CTTCCGATTGTTCCTCATTGCTCACAAAGAATTGTGAGAAGACAAGTCAG
CTTGATCTCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTT
TTAATGGCGTTCTTTGAATTTCTGGAGTTCAGCTTCTTGAGCTCTTTGTA
TATATTGGATAGTAGCCCCCCTTAGGAGATCTTCAGGATGTCCTAGAGAA
AGACGTTAGGGTTAGGGAAGTGGTTCTCGACCTATGGGCTGTGACCCCAC
TAGGGTCACACATCAGGAATCCTGCTATGAGATATTTACATCATCATTCA
TAACAGTAGCTAAATTACAATTATGAAGTAGCAATGAAGTAATTTTATGG
TTGAGGGGTCACCACAATATGAGGAACTGTATTAAAGGGTCACAGGTTGA
GAGCCACTGATGTACCCCCCCTGAAAATCCCTTGAACTTGTATACTGCGC
CGCGCCTTGTTGCCTACCAGCAGGGGCATCATTCTATGGTGTCTTTCATC
CTGATGACCGCTGCCCTCCTGGGACGTCATTACCATGCAGGTCCTTTTGC
TCTGTACTGCTTATTGTCTGCCCTATCCCCCTTTGTCCAATCTTATCATC
GACCCGTCTCTACTGATTCCTTTTCATTTTCCCTATTTGACCCTGTGCCC
CTATTTGCTTCCGTCTTCTCTCTCCCTTGTTTCTCATCCTCCCCCTTCAA
CTTTTCCTCTTTCTTTCCCTTCTCTATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_e04.b1 MSMg01no144_e04.b1 CHROMAT_FILE:
MSMg01no144_e04.b1 PHD_FILE: MSMg01no144_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:02 2005
         (567 letters)



>mm_chr17_10678501_10679467
          Length = 967

 Score = 1021 bits (528), Expect = 0.0
 Identities = 555/564 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcttctacgcaggcaaaccgggagaactgggtcatcctgtaagcaaggtctta 63
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggaattctcttccaaggaggcaaaccgggagaactgggtcatcctgtaagcaaggtctta 708

                                                                       
Query: 64  acgatgcaagtggagctagaccctgctgtgttgctgttcctgtcctggtaattggtgaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acgatgcaagtggagctagaccctgctgtgttgctgttcctgtcctggtaattggtgaga 648

                                                                       
Query: 124 ggtgttcactgccctcctaagagaaagaagctcttagttacaatccttatgagatgactc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ggtgttcactgccctcctaagagaaagaagctcttagttacaatccttatgagatgactc 588

                                                                       
Query: 184 aggccaggagccaggaaacctacataaaaacaatgtgaacagaaatccatacacaagcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aggccaggagccaggaaacctacataaaaacaatgtgaacagaaatccatacacaagcat 528

                                                                       
Query: 244 gaacattcttaaactaaacgagaagtccccaaacacctatgttcacagctgttctctgta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaacattcttaaactaaacgagaagtccccaaacacctatgttcacagctgttctctgta 468

                                                                       
Query: 304 agcacagccctagacaggagcccagagattcctatccttgagccaaagacttgaacatct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agcacagccctagacaggagcccagagattcctatccttgagccaaagacttgaacatct 408

                                                                       
Query: 364 ggtctctgccaagaagataataggtagggagtgagctggctggcagcaaagaggttccag 423
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggtctctgggaagaagataataggtagggagtgagctggctggcagcaaagaggttccag 348

                                                                       
Query: 424 ctagatatgaggagcaggcagaccctgcaggaagatattgagcctaatacactggggtcg 483
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 347 ctagatatgaggagcaggcagaccctgcaggaagatattgagcctaatgcactggggtca 288

                                                                       
Query: 484 ctggctaaggtccacgtggtgctcatctgaagacccttcccgacagccccagggacttaa 543
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 287 ctggctaaggtccatgtggtgctcatctgaagacccttcccaacagccccagggacttaa 228

                                   
Query: 544 agaatgctcctcacaacgtgcatt 567
           ||||||||||||||||||||||||
Sbjct: 227 agaatgctcctcacaacgtgcatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)