Query= MSMg01no144_h20.b1 MSMg01no144_h20.b1 CHROMAT_FILE:
MSMg01no144_h20.b1 PHD_FILE: MSMg01no144_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:20 2005
(604 letters)
>mm_chr17_77886891_77887896
Length = 1006
Score = 847 bits (438), Expect = 0.0
Identities = 506/532 (95%), Gaps = 9/532 (1%)
Strand = Plus / Minus
Query: 81 tgtgagctttagggcttttcttccctctgggaagtatcttttcttttatcatccagggta 140
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1006 tgtgagctttagggcttttcttccctctgggaagtatcttttcttttattatccagggta 947
Query: 141 atatgtgaaatagttcttgactcttgtctgctcttaagtatactttatatttccaaaata 200
|||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 946 atatgtgaaatagtccttgactcttgtctgctcgtaagtatacttcataattccaaaata 887
Query: 201 agatattccgtccagcatttagttgcactgtatcatttaattttgcttatttcttgcctg 260
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 agatattccatccagcattcagttgcactgtatcatttaattttgcttatttcttgcctg 827
Query: 261 ttttggatgttagagggatgagccagaatctcatgtaacacaaagttcaaactgttgcta 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ttttggatgttagagggatgagccagaatctcatgtaacacaaagttcaaactgttgcta 767
Query: 321 gagctgagggtgaccttaca-----gcctttttcatttaccactcaaggtctggaaccac 375
|||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||
Sbjct: 766 gagctgagggtgaccttacagtaatgcctttttcctttaccactcaaggtctggaatcac 707
Query: 376 aggtttatggttctatgctgga--ctcagtca-attcttccttcgtgtatgttcttatat 432
||||||| |||||||||||||| |||||||| | ||||||| ||||||||||||||||
Sbjct: 706 aggtttacggttctatgctggactctcagtcaga-ccttcctttgtgtatgttcttatat 648
Query: 433 tttgggttgtgtatgctcgtggagaccagagttcatccatgagtatggaccttcaagcac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tttgggttgtgtatgctcgtggagaccagagttcatccatgagtatggaccttcaagcac 588
Query: 493 tatcatcattatttatttatctgtctatctgtcatttgtttatcatctatctatcatcta 552
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 587 tatcatcattatttatttatctgtctatctatcatttgtttatcatctatctatcatcta 528
Query: 553 cctatctatcaatataagtatctgtctgtctgtctgtctgtctgtctgtctg 604
||||||||||||| |||||||||||||||||| ||||||| |||||| ||||
Sbjct: 527 cctatctatcaatctaagtatctgtctgtctggctgtctggctgtctatctg 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1006
Length adjustment: 10
Effective length of query: 594
Effective length of database: 996
Effective search space: 591624
Effective search space used: 591624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_h20.g1 MSMg01no144_h20.g1 CHROMAT_FILE:
MSMg01no144_h20.g1 PHD_FILE: MSMg01no144_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:20 2005
(341 letters)
>mm_chr17_77726098_77726838
Length = 741
Score = 629 bits (325), Expect = 0.0
Identities = 337/341 (98%)
Strand = Plus / Plus
Query: 1 aggaactaattcagatgctcaggaaggaaacaggagttgctatttcatatcgtcccaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaactaattcagatgctcaggaaggaaacaggagttgctatttcatatcgtcccaccc 260
Query: 61 aattaattatctggtacaaagagaactgttggtttcaataagtaggcagaacaaacattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaattatctggtacaaagagaactgttggtttcaataagtaggcagaacaaacattg 320
Query: 121 ctgaaaatatgtctccatcgattacaattgatttagagcgatgatctgtgtcacaagtac 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaaatatgtctccatcaattacaattgatttagagcgatgatctgtgtcacaagtac 380
Query: 181 cctgtgacctagagattctgtttatcaactatagcagtttctatgcctcctttctcatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtgacctagagattctgtttatcaactatagcagtttctatgcctcctttctcatca 440
Query: 241 tgtgtggcaaagatttcgagtccttgctttgtattttttgttgtacagcagcagcaggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 441 tgtgtggcaaagatttcgagtccttgctttgtattttttgttgtacagcagcatcagtca 500
Query: 301 gagagcactgttcatcaattcaccattaataaggggtggtc 341
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gagagcactgttcatcaattcagcattaataaggggtggtc 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
