BAC Information

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BAC

Clone NameMSMg01-144O19
Chromosome17 (Build37)
Map Location 52,973,833 - 52,974,173
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144O19.T7 (MSMg01no144_o19.b1)MSMg01-144O19.TJ (MSMg01no144_o19.g1)
ACCAG348859AG348860
length745745
length of high quality
(start - end)
372 (46 - 417)342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no144_o19.b1 PHD_FILE: MSMg01no144_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:52 2005CHROMAT_FILE: MSMg01no144_o19.g1 PHD_FILE: MSMg01no144_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGAAGCGCGGA
ATTCTTTGTTCTTTCCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
TGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGTTTATATCTTCAAGGCTTTTCCCCACTTT
CTTTTTTTTTTTTTTTTTTTCATACCTTAGATATTTTTTTTTTCATTTTT
TATTAGGTATTTAGCCCCCCCACATTTCCAATGCTATACCAAAAGTCCCT
CTTATTCTCTCATCTTCCTCCCCTTGTTCCCCCTACTCTCTTTTTCCGTC
CCTGTTCTTTCTTTGCCGTTCCACATATACTTTTTGTTTTCTCTTATGTC
TCCTTCCCCTTTTTCTCCTTTTCTTTCTTCCCCCTTTTTTCTCCTTCTCT
GCTTCTCTCTGTCCCTTCCTCCCCTACCTTTCCTCTTTTTTCTCTATTTC
CTTCCCTTTCCCTTCTCTCTTTTTCTATACTTTCTCCGTTTTCCGGCTCC
TTCCTTTATCACATCCCTTTTTCTTCTCTTTTCCCCGCCCCCTTT
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCTCAAGTGGAGAATCTGGC
CTGTACGTCACTAAGTATCTCCACGTCCTTATTAAAGAGGTCACAAACCA
CAGGGAGCATTTAGCAGCAAATACATGAACATCAAACACAAAACTTTAAA
GGCCACGTGGAAGATGTCTACTCACCACTGTGACATTGAAAGCATACAGG
AGGTCAAAGGGCAAGGCAGCAATCAGATCAATGATGAACCAGGTGGTGAC
GTAGTGAATGCAAATGGATCTCGCTTCAAAGATAACTTGGCCAGACTTGC
TGACATAAGTTGTTCGGAAATTTAGAATAATATCTGCTTGGGGAAAAAAA
GACAATTGAGAAAAAAAACGACCAAAAGAGGGGAAAGAAAAGGAAGAGTG
AACAATAATAATACTTTTAAAAAGAAAGAAAAGAAGAAAAAGGAAAGGAA
AGGAAAGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGAGCAGATTGACCTAATAAAGGACCACTGAATGAGTATTGT
CCCCCTTTCCCCGCATTAATTGTGTCTTTCCATTATCCCCCAATCTCAAT
AACTCCACACCTCTAGCTTGCCTTTTGACCCAATGCCCTCCACCCTTTTT
CTCGCGCTCTCCCCACCTCCCTTCTCTTTTCTGCCCCCCTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_o19.g1 MSMg01no144_o19.g1 CHROMAT_FILE:
MSMg01no144_o19.g1 PHD_FILE: MSMg01no144_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:52 2005
         (342 letters)



>mm_chr17_52973633_52974373
          Length = 741

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccctcaagtggagaatctggcctgtacgtcactaagtatctccacgtccttattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 actccctcaagtggagaatctggcctgtacgtcactaagtatctccacgtccttattaaa 482

                                                                       
Query: 61  gaggtcacaaaccacagggagcatttagcagcaaatacatgaacatcaaacacaaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaggtcacaaaccacagggagcatttagcagcaaatacatgaacatcaaacacaaaactt 422

                                                                       
Query: 121 taaaggccacgtggaagatgtctactcaccactgtgacattgaaagcatacaggaggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaaggccacgtggaagatgtctactcaccactgtgacattgaaagcatacaggaggtca 362

                                                                       
Query: 181 aagggcaaggcagcaatcagatcaatgatgaaccaggtggtgacgtagtgaatgcaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagggcaaggcagcaatcagatcaatgatgaaccaggtggtgacgtagtgaatgcaaatg 302

                                                                       
Query: 241 gatctcgcttcaaagataacttggccagacttgctgacataagttgttcggaaatttaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatctcgcttcaaagataacttggccagacttgctgacataagttgttcggaaatttaga 242

                                                     
Query: 301 ataatatctgcttggggaaaaaaagacaattgagaaaaaaaa 342
           ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 ataatatctgcttgggg-aaaaaagacaattgagaaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)