Query= MSMg01no144_o21.b1 MSMg01no144_o21.b1 CHROMAT_FILE:
MSMg01no144_o21.b1 PHD_FILE: MSMg01no144_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:52 2005
(198 letters)
>mm_chr17_42612973_42613570
Length = 598
Score = 323 bits (167), Expect = 4e-93
Identities = 188/195 (96%)
Strand = Plus / Plus
Query: 4 ggaattctcaagtggtctccggttacttatgagcaaagaaaactggctcaagacacattt 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaagtgggcagaggttacttatgagcaaagaaaactggctcaagacacattt 263
Query: 64 acaattcccatcagaagaaaaaggagtacacagaaaaattagggtaggaatttacttctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaattcccatcagaagaaaaaggagtacacagaaaaattagggtaggaatttacttctg 323
Query: 124 tggaatcaaaaaacccagaataagaaaagttaatttaaaatttttgcttttgaaaaggct 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggaatcaaaaatcccagaataagaaaagttaatttaaaatttttgcttttgaaaaggct 383
Query: 184 gttttcagatgggct 198
||||||||| ||||
Sbjct: 384 attttcagataggct 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space: 112100
Effective search space used: 112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no144_o21.g1 MSMg01no144_o21.g1 CHROMAT_FILE:
MSMg01no144_o21.g1 PHD_FILE: MSMg01no144_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:52 2005
(670 letters)
>mm_chr17_42699675_42700744
Length = 1070
Score = 1241 bits (642), Expect = 0.0
Identities = 663/670 (98%)
Strand = Plus / Minus
Query: 1 aaaacaaaactagatgcacccagccctttcttcactgtttcatctcttcataagttaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aaaacaaaactagatgcacccagccctttcttcactgtttcatctcttcataagttaaaa 811
Query: 61 atgtttccaaattaaatttctttgtgtttcaaggtggggagcacattgccacagcatgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 atgtttccaaattaaatttctttgtgtttcaaggtggggagcacattgccacagcatgca 751
Query: 121 tgatagctcacaggagttgggagttggttctctacttctttcacacaggtctctgggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tgatagctcacaggagttgggagttggttctctacttctttcacacaggtctctgggatt 691
Query: 181 gaacttaggttgtcagacattgtcagatgccttcacctgctgagtccctttgctgtccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gaacttaggttgtcagacattgtcagatgccttcacctgctgagtccctttgctgtccct 631
Query: 241 cttcttcatatttttaggagcttaacatcatagtgttcaaaagatctgattggtgagagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cttcttcatatttttaggagcttaacatcatagtgttcaaaagatctgattggtgagagc 571
Query: 301 aatatttctcaaagcatgaccctgtaatccagttctgcaaagcttccgcaggaagaaaga 360
||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct: 570 aatatttctcaaagcatgaccttgtgatccagttctgcaaagcttctgcaggaagaaaga 511
Query: 361 gttttaatctttcaacatatcatgcaaagagtagataacatgcttccagtttgaagagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gttttaatctttcaacatatcatgcaaagagtagataacatgcttccagtttgaagagtt 451
Query: 421 ggccagtgtactaatggttctgagcgcattgatgatctccacataggactttatcaattt 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggcctgtgtactaatggttctgagcgcattgatgatctccacataggactttatcaattt 391
Query: 481 ctaaacttaattgattctggatattcttattgcttggaggatcatagtgtaatgagctat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctaaacttaattgattctggatattcttattgcttggaggatcatagtgtaatgagctat 331
Query: 541 tttgtgttaattatgcagcttgtaagtgcacacagcctttctgaagacattagaagagat 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 330 tttgtgttaattatgcagcttgtaagtgcacacagactttctgaagacattagaagagat 271
Query: 601 aatatttataactctgagcaggcacccactatgtgctggaatcaatgttaaagcccgttt 660
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 270 aatatttataactctgagcaggcacccactatgtgctggattcaatgctaaagcccgttt 211
Query: 661 tactactgag 670
||||||||||
Sbjct: 210 tactactgag 201
Score = 114 bits (59), Expect = 2e-29
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 524 atagtgtaatgagctattttgtgttaattatgcagcttgtaagtgcacacagcctttct 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 atagtgtaatgagctattttgtgttaattatgcagcttgtaagtgcacacagcctttct 959
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
