Query= MSMg01no145_d23.b1 MSMg01no145_d23.b1 CHROMAT_FILE:
MSMg01no145_d23.b1 PHD_FILE: MSMg01no145_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:17 2005
(584 letters)
>mm_chr17_88741050_88742033
Length = 984
Score = 938 bits (485), Expect = 0.0
Identities = 560/599 (93%), Gaps = 28/599 (4%)
Strand = Plus / Plus
Query: 5 gaattcttaattt---aataccgatgctgggggtgtggctctctggtagaatctctgcct 61
||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaatttttaatttaaaaata--gatgctgggggtgtggctctctggtagaatctctgcct 252
Query: 62 ggcttgtgtgaagtcctgggttcaatcctcgccacccc--cccccccaaccccctcagtg 119
||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct: 253 ggcttgtgtgaagtcctgggttcaatcctcg------ctgcccccccaacaccctcagtg 306
Query: 120 cctgagagggggaaagaattcagaatttcttaaattcctcaagactcattcactgttgaa 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cctgagaggggaaaagaattcagaatttcttaaattcctcaagactcattcactgttgaa 366
Query: 180 atgttgatgcttttctagcaaaatatcttacctcatcttgctactgcctttcatattttt 239
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atgttaatgtttttctagcaaaatatcttacctcatcttgctactgcctttcatattttt 426
Query: 240 tgatagtgaaatttattactttaattgatttctcaatgtactattgaatat--------- 290
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 427 tgatagtgaaatttattactttaa-tgatttctcaatgtactattgaatatttgttttgt 485
Query: 291 ----tttt-ttttgttttgtttgtttcattttttgagacagggtttctctgtgtagacct 345
|||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 486 tttgttttgttttgttttgtttgtttcgttttttgagacagggtttctctgtgtagccct 545
Query: 346 ggctgtcctggaactcactctgtagaccaggctggcttcaaacttagagctcccccttcc 405
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 546 ggctgtcctggaactcactctgtagaccaggctggcctcaaactcagagctcccccttcc 605
Query: 406 tctgcctcctgagtgctgagataatgccatttttttaatggcaaacatttggttccacag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctgcctcctgagtgctgagataatgccatttttttaatggcaaacatttggttccacag 665
Query: 466 acattttataaagaacaaacggaaacgtttaacagattgacgcgttatcctcgtgcagga 525
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 666 acattttataaagaacaaacggaaacgtttaacagattgacacgttatccttgtgcagga 725
Query: 526 gcatctccgtattgctccatttttaatatatgttctgccaaagtgaacgcctgacagtc 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gcatctccgtattgctccatttttaatatatgttctgccaaagtgaacgcctgacagtc 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_d23.g1 MSMg01no145_d23.g1 CHROMAT_FILE:
MSMg01no145_d23.g1 PHD_FILE: MSMg01no145_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:17 2005
(605 letters)
>mm_chr17_88837098_88838102
Length = 1005
Score = 1147 bits (593), Expect = 0.0
Identities = 602/605 (99%)
Strand = Plus / Minus
Query: 1 acgtgggaggcagaggcaggcagatctctgtgagttcaaacccagcctgatctacagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 acgtgggaggcagaggcaggcagatctctgtgagttcaaacccagcctgatctacagaga 882
Query: 61 gagtcccaggacagtcagggctgcacagagaaaccctgtctcaaaacaaacaaacaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 gagtcccaggacagtcagggctgcacagagaaaccctgtctcaaaacaaacaaacaaaca 822
Query: 121 aacaataacgacaaaaagcagccacaacgtcagtgtctcagccaaggttatctgctagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aacaataacgacaaaaagcagccacaacgtcagtgtctcagccaaggttatctgctagcc 762
Query: 181 tttcaccttctgacaaagatggactaatattgctagtacagtatttgaaatacagaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttcaccttctgacaaagatggactaatattgctagtacagtatttgaaatacagaatga 702
Query: 241 acttatattttatgtagttctttctcccattcatcattgcatctattttaaactcaagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 acttatattttatgtagttctttctcccattcatcattgcatctattttaaactcaagta 642
Query: 301 gctaaatgctcttcctgaattccgaaggaatcataaaatttgaaagctgcagatagttca 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gctaaatgctcttcctgaactccgaaggaatcataaaatttgaaagctgcagatagttca 582
Query: 361 gagataaatcaccccaggagccagcctaccataaaatagataaactcagaaaaaaatata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gagataaatcaccccaggagccagcctaccataaaatagataaactcagaaaaaaatata 522
Query: 421 cctatccaaggtcaagtaatgaattttctgcatcttcattcattaagcccttttgctggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cctatccaaggtcaagtaatgaattttctgcatcttcattcattaagcccttttgctggt 462
Query: 481 cccctgccatgactgaccacacccagaccacactcagaccacaagcttgggcacctttgt 540
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 461 cccctgccgtgactgaccacacccagaccacactcagaccacaagcctgggcacctttgt 402
Query: 541 ccaacctcaacctgtaaagttcaagcgttttagcaaatccgctccacttagttcaaagtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccaacctcaacctgtaaagttcaagcgttttagcaaatccgctccacttagttcaaagtc 342
Query: 601 tggag 605
|||||
Sbjct: 341 tggag 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
