Query= MSMg01no145_i07.b1 MSMg01no145_i07.b1 CHROMAT_FILE:
MSMg01no145_i07.b1 PHD_FILE: MSMg01no145_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:37 2005
(618 letters)
>mm_chr17_33439074_33440091
Length = 1018
Score = 1164 bits (602), Expect = 0.0
Identities = 614/618 (99%)
Strand = Plus / Plus
Query: 1 atactcatgtagacactgtggtgaaactttcctgtattccatggcccgtcgtaatcatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactcatgtagacactgtggtgaaactttcctgtattccatggcccgtcgtaatcatga 260
Query: 61 aaaaactcacaaaagagatcacacaagagaaaaaacatactcatgtagacactgtggtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaactcacaaaagagatcacacaagagaaaaaacatactcatgtagacactgtggtga 320
Query: 121 aactttcctgtattccatggcctgtcataatcatgaaaaaactcacaaaagagaatggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactttcctgtattccatggcctgtcataatcatgaaaaaactcacaaaagagaatggag 380
Query: 181 tttcatatgtaagtattgtgggaaagcatgcattcattcttatcaacttcttcagcatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcatatgtaagtattgtgggaaagcatgcattcattcttatcaacttcttcagcatga 440
Query: 241 aagaagccatactcgagagaaacggtatacatgtgctcagtgtggcaaagcgtttagacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaagccatactcgagagaaacggtatacatgtgctcagtgtggcaaagcgtttagacg 500
Query: 301 gtcctcaaaccttcacaaacatgaaagaattcacagtgaaaggaaactttatgcatgtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcctcaaaccttcacaaacatgaaagaattcacagtgaaaggaaactttatgcatgtaa 560
Query: 361 acattgtgggaaggcctttatcagtgagggcaactgttccaaccatgaacgaattcatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acattgtgggaaggcctttatcagtgagggcaactgttccaaccatgaacgaattcatac 620
Query: 421 tgcaggaaaaacctatatttgcaagcagtgtgggaaagggtttacatgttcttcatacct 480
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 tgcaggaaaaacctacgtttgcaagcagtgtgggaaagggtttacatgttcctcatacct 680
Query: 481 tcaaaagcatgaaagacgccatactcaagagaaacagtatacatgtgctcagtgtggcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaaagcatgaaagacgccatactcaagagaaacagtatacatgtgctcagtgtggcaa 740
Query: 541 agcgtttagacggtcctcaaaccttcacaaacatgaaagaattcacagtgaatagaaact 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 agcgtttagacggtcctcaaaccttcacaaacatgaaagaattcacagtgaaaagaaact 800
Query: 601 ttatgcatgtaaacattg 618
||||||||||||||||||
Sbjct: 801 ttatgcatgtaaacattg 818
Score = 371 bits (192), Expect = e-107
Identities = 246/264 (93%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 234 agcatgaaagaagccatactcgagagaaacggtatacatgtgctcagtgtggcaaagcgt 293
||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 686 agcatgaaagacgccatactcaagagaaacagtatacatgtgctcagtgtggcaaagcgt 745
Query: 294 ttagacggtcctcaaaccttcacaaacatgaaagaattcacagtgaaaggaaactttatg 353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 746 ttagacggtcctcaaaccttcacaaacatgaaagaattcacagtgaaaagaaactttatg 805
Query: 354 catgtaaacattgtgggaaggcctttatcagtgagggcaactgttccaaccatgaacgaa 413
||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||
Sbjct: 806 catgtaaacattgtgggaaggcctttagcagtgcgggcaaccgttacaaccatgaacaaa 865
Query: 414 ttcatactgcaggaaaaacctatatttgcaagcagtgtgggaaagggtttaca-tgttct 472
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 866 ttcataatgcagaaaaaacctacatttgcaagcagtgtgggaaagggtttacact-ttcc 924
Query: 473 tcataccttcaaaagcatgaaaga 496
|| ||||||| ||||||| |||||
Sbjct: 925 tcttaccttcgaaagcataaaaga 948
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 3
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_i07.g1 MSMg01no145_i07.g1 CHROMAT_FILE:
MSMg01no145_i07.g1 PHD_FILE: MSMg01no145_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:37 2005
(556 letters)
>mm_chr17_33493681_33494635
Length = 955
Score = 1021 bits (528), Expect = 0.0
Identities = 546/552 (98%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 5 tgtgtgtatgggaagccgcggtagcttttttggctctaaattgaagatgaacttggaggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgtgtgtatgggaagccgcggtagcttttttggctctaaattgaagatgaacttggaggg 696
Query: 65 taaccagaggaaaatttaatcgagtttttgaggttgagagggggaaagcagaaaacaggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 taaccagaggaaaatttaatcgagtttttgaggttgagagggggaaagcagaaaacaggg 636
Query: 125 caggcaagctttaaatattggcatttgtggttaggcgagaaaacaaaacaaaaggatgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 caggcaagctttaaatattggcatttgtggttaggcgagaaaacaaaacaaaaggatgcc 576
Query: 185 ttttaagttcaacatggagatcagagaaacagtgaggaagccaagggtgttaaggaaagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttttaagttcaacatggagatcagagaaacagtgaggaagccaagggtgttaaggaaagc 516
Query: 245 atattttctaagtgttgagacttggatttgagttcagaggggacctgatttacagggtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atattttctaagtgttgagacttggatttgagttcagaggggacctgatttacagggtct 456
Query: 305 tgtttcatacacggaaggattacaccagagacaaagtctgagaaaatgtgatccatgaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgtttcatacacggaaggattacaccagagacaaagtctgagaaaatgtgatccatgaca 396
Query: 365 tgttgtgagacattttgcaaaacatccagtttatataccaggagcttttcttgagcgcgt 424
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgttgtgagaca-tttgcaaaacatccagtttatataccaggagcttttcttgagcgcgc 337
Query: 425 cccagtaagaaagggcttaagatcttcctttgctgactggtttctatcttatgttaatct 484
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 336 cccagtaagaaagggcttaagatcttcctttgctgactggcttctttcttatgttaatct 277
Query: 485 tcagattgccttttgttttattttgtttttactcctattttgcatttgtatgtaaacatt 544
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcaggttgctttttgttttattttgtttttactcctattttgcatttgtatgtaaacatt 217
Query: 545 tgtagctatgag 556
||||||||||||
Sbjct: 216 tgtagctatgag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
