BAC Information

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BAC

Clone NameMSMg01-145L17
Chromosome17 (Build37)
Map Location 52,798,674 - 52,799,148
singlet/doubletsinglet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145L17.T7 (MSMg01no145_l17.b1)MSMg01-145L17.TJ (MSMg01no145_l17.g1)
ACCAG349456AG349457
length699695
length of high quality
(start - end)		509 (72 - 580)609 (76 - 684)
definitionCHROMAT_FILE: MSMg01no145_l17.b1 PHD_FILE: MSMg01no145_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:54 2005CHROMAT_FILE: MSMg01no145_l17.g1 PHD_FILE: MSMg01no145_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAGGCG
CGGAATTCTCCCATGTACGCCCATCCCCTCCTCCTATGCCATGAGAGGAG
AACACCTCATCACCCCACTCCCGCACACAGTGCAACATTCAGACCCCAGA
TAAAGGACAGGATAGAAGCTTCATAGTCAAGTGATAAAGAGGATTTTTAG
GGCTGGCTAGGCGCTGAGATATGAGAGGTTCTCAGTTTGATGTGAAGACA
AAATGAGGCCTGAGCCTCTCTGATTTTTATAGCCTGTCAGCATGAATACC
CTGAGAGAGAGACAATGGAAGGCTATAAAGCAAAATTGCCATGGCAGAGA
TGCAGAGATGGCTCAGTGGTGAAGAGCCCTGGCTGTTTCTCCACAGTATG
GACTGGGACAAATTTCTAGCACCCATATGGCAACATACAACTGCGTGTAA
CTCCAGTTCCAGAAGCTCAATTTCCCTATTGTGTCCTCCTAATGTACCAG
ACATGTGAGTACTGCACAGACATACCTGCAGGCAAAATGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGGTTTGAATATGCTTAGCCCATGCAAAGTG
GGACTACTAGGAGGTATGTCATCATTGGAGGAGGTATGGCCTTCCTATAA
TGAGTATGTTACTGCGGGGATAGGCTTTTGGAGGTCTCCTCCCCTGGTC

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTTACAAAGGCAAAGAACTCTTC
GCCTAGAAGAGAACTTGGAAATAAAACTCCATTTTAAAAATGGATATGAA
AGCCAAGACAATGGTTCAGTGTGCAAGAGAGCTGGCTATGCAAGCACATG
GACCAGAGCTGACTCCCCAGTAACTCCATAAAGAGCAAATGTGGCATGAA
CTCATATGACCTCATGGCTGGGAGGGATGAGACAAGAGGACTTCTGGGAC
TTTCTGGATGTTGGCCTAGCTCTGGATTCAGTGAAATCCTGTCTCAAAAA
GAACAAGACAAAGTGTGGAGCAGAAACTGAAGGAATCACCATCCAGAGAC
TGCCCCACCTGGGGATCCATCTCATATACAATCACCAAACCCAGACACTT
TTGTGGATGCCAACAAGTGCTTACTGACAAAAAACCTCTTATAGTTGTCT
CCAGAGAGGCTCCACCAGTGCCTGACATATACAGAAGTGGATATTCGCAG
CCTATCATTAGATTGAGCACGGGGTCCCCAATAAAGGAGCTAGAGAAAGG
ACCCAAGGAGCTTAAGGGATTTGCAGCCCCATAGGACAAACAACAATATG
AACTAACCAGTGCCCCCAGAGCTCCCAGGGACTAAATCACCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_l17.b1 MSMg01no145_l17.b1 CHROMAT_FILE:
MSMg01no145_l17.b1 PHD_FILE: MSMg01no145_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:54 2005
         (509 letters)



>mm_chr17_52798674_52799582
          Length = 909

 Score =  911 bits (471), Expect = 0.0
 Identities = 474/475 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcccctcctcctatgccatgagaggagaacacctcatcaccccactcccgcacacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 catcccctcctcctatgccatgagaggagaacacctcatcaccccactcccgcacacagt 416

                                                                       
Query: 61  gcaacattcagaccccagataaaggacaggatagaagcttcatagtcaagtgataaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gcaacattcagaccccagataaaggacaggatagaagcttcatagtcaagtgataaagag 356

                                                                       
Query: 121 gatttttagggctggctaggcgctgagatatgagaggttctcagtttgatgtgaagacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gatttttagggctggctaggcgctgagatatgagaggttctcagtttgatgtgaagacaa 296

                                                                       
Query: 181 aatgaggcctgagcctctctgatttttatagcctgtcagcatgaataccctgagagagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatgaggcctgagcctctctgatttttatagcctgtcagcatgaataccctgagagagag 236

                                                                       
Query: 241 acaatggaaggctataaagcaaaattgccatggcagagatgcagagatggctcagtggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 acaatggaaggctataaagcaaaattgccatggcagagatgcagagatggctcagtggtg 176

                                                                       
Query: 301 aagagccctggctgtttctccacagtatggactgggacaaatttctagcacccatatggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aagagccctggctgtttctccacagtatggactgggacaaatttctagcacccatatggc 116

                                                                       
Query: 361 aacatacaactgcgtgtaactccagttccagaagctcaatttccctattgtgtcctccta 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 aacatacaactgcgtgtgactccagttccagaagctcaatttccctattgtgtcctccta 56

                                                                  
Query: 421 atgtaccagacatgtgagtactgcacagacatacctgcaggcaaaatgtgtgtgt 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  atgtaccagacatgtgagtactgcacagacatacctgcaggcaaaatgtgtgtgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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