BAC Information

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BAC

Clone NameMSMg01-146C10
Chromosome17 (Build37)
Map Location 82,915,718 - 82,916,133
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141
Downstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146C10.T7 (MSMg01no146_c10.b1)MSMg01-146C10.TJ (MSMg01no146_c10.g1)
ACCAG349767AG349768
length1,2301,231
length of high quality
(start - end)		612 (127 - 738)685 (128 - 812)
definitionCHROMAT_FILE: MSMg01no146_c10.b1 PHD_FILE: MSMg01no146_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:35 2005CHROMAT_FILE: MSMg01no146_c10.g1 PHD_FILE: MSMg01no146_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCACTCTGTTTNTNGACAATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGACACCCAATCAGACCCTATAAACTGGTCTCTAGAC
CACCTTCTTCTGCCTTTCCCATTTAGTGTGGCTTCCACCACAGTTACATG
GAGATGACAACTAAGTTTTCATGGGGGAGAAAACGGATGACTTCTGCAAA
AGAGAGACCATAAAGCTTGGCATGTTTCCATCATAGTTTTAGGAGGTAGT
TCCATCCTGTGGACTTCCTTCTCTTGTGTCAGTCAGGCTAGAGAAAACTG
CAATTTTGAAATTTCTTCAAAGTCAAAACATTGGGGAAGAGAGGGAGGAA
GACAAAGATCTTGAAAAGTTTAAACTCTTTCAGTTTGAGACCTCTGTCAC
TGCTCTTGTCTCTTACCTCTATTATTAATGGCTTCAAATAGTGTTTTGAA
CCTCATATCACAGCAATCTGAGTCTTTGTCTTCTATCTCCTACCTTTGTG
GACTTTTAAAATAAGACACTGGACAATTCACAGAATCTAGAATAATCTCT
TTTAATGGCAGCTGTTAGCAATCTTAGTCTGGAACCCCAAAGTCCTTTGT
AGTGTTATCTAAGATATCCACATATCCTTAGGGCCGAAACATGGGTATCT
GGTGGAGAATTGCTCTAACAAGTTTATTTTAATTGCCAAATTTAATTATT
AATATATGAAGTGGATGTTTTTGGATATGTCATGTGGTACAGACTCATGT
GATACTTTGCTAAGGTAGGACCCTGTGAGGACATGTGATATTTGGAGAGA
GGAGAGAGTATAAATGTGACTTCATGTTCACTGATGGTGCATCTGCCTAT
CTAGACTTGCCACTCTTTACTGGTCTTGGTATCTTGGCTGATCTTCACTT
TATTGAAAGAAGCCCTTCAAAAAACTTCTGTATCTTCCACTGGTCTTGTT
ATCTCCTTCTGCCTCATGCTGATTGTCTGTAGGTCTGGTGAATTTCGTTG
GAACATTTCCTTGCTGTTTACTTCTTGTTTGATTCCAACTCTCATCCTTG
TATTTTTTGTTTGTTTTTTTTACTTAGTTATATTTGATATTTCCCCACAT
ATTCTTTCTTTTCCATTTAACCCCCTTTTCCCCTATTTCCACATTTTGCC
CCCTCCCCTCTGGCCTGTTTTTTATTTCCTGCTATCTTCCTTTTTTTTTA
TATCTATTATTCCGTTTTATTTCTCTGTCT

CCCGTTTCTTTNTNNTTAGATGGTATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAACTTAGATCTGTACTC
TACTTTTTAATAGGTTTACCTTGGATTACTGGAGTCTGCCTGGTGAGTTC
TTTGTATATATTGGATATTAACCCCTATCAGATGTAAGGTTTTTAAAGAT
TTTTAACCAATCTGTAGGTTGCCATTTTGTCCTATTGGCAGTGTTCTTTT
TCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGAT
CTTAGGGAATAGGCCATTGGTGTTCTATTCAGGAAGTTTTCCCCTGTGCC
CAAATATTCGAGGCTCTTCCCCACTTTCTCTTCTATTAGATTTAGTGTAT
TTGATTTTATGTGAAGGTCCTTGATCCACTAGGACTTGAGTTTTGTGCAA
GGAGATAGGTATGGATCAATTTTCATTCTTCTATATGCAGACCACCAGTT
GAACCAGCACCATTTGTTAAAAATGCTGTCTTTTTCCTTCTGAATGGTTT
TAGCTTCTTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATATCT
GGATCTTCAATTCTGTACCAATACCATGCAGTATTTATCACTATTGCTTT
ATAGTATATCTTGAGGTCAGGGATGGTGATTCCCCCAGAAGTTCTTTTAT
TGTTGAGAATAGTTTTTTCTATCCTAGGTTTTTAGTTATTCCAAATGAAT
TTGAGAATTGTTCTTTCTAACTCTGAAAATTTGAGTTGGAATTTAGGTAG
GGATTGCACTCATTCTGTAGATTGCTTTCAGCAAGATAGCCATTTTTACT
ATATTTATCCTGTCAATCCATGAGCATGGGTGATCTTTCCATCTTCTGAG
GTCTTCTTTCTTTCCTTCTTTCAAAACCTGTGCTAGCTTGGTAATGAAGA
CCAAGTGCTATACCCTATTCCTCTCAGCTCCCACCCAGTTTACGTTTGAT
CCCTCTGTACTTCCAATCCATCTTAAAACCTCTGGTCTCTTCCGCTTCCT
TATTATGTTTTTAACCCAGTAAATAAATACTTGTGTCCCATTCGTTTATA
ACCTCTTTGGTGAAAATACACCCTTCCTTCTTTTTTTTCCTGATTATAAT
GATGAATGTTTTCTCTTCTAACATTGGTTGTTCTTATTAATTCTCAATAA
ATTCTTTGTTTTGTATGTTTTCTCTATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_c10.b1 MSMg01no146_c10.b1 CHROMAT_FILE:
MSMg01no146_c10.b1 PHD_FILE: MSMg01no146_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:35 2005
         (612 letters)



>mm_chr17_82915263_82916274
          Length = 1012

 Score =  710 bits (367), Expect = 0.0
 Identities = 408/431 (94%), Gaps = 15/431 (3%)
 Strand = Plus / Minus

                                                                       
Query: 182 gaaatttcttcaaagtcaaaacattggggaagagagggaggaagacaaagatcttgaaaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gaaatttcttcaaagtcaaaacattggggaagagagggaggaagacaaagatcttgaaaa 812

                                                                       
Query: 242 gtttaaactctttcagtttgagacctctgtcactgctcttgtctcttacctctattatta 301
           |||||               ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 811 gttta---------------agacctctgtcactgctcttgtcccttacctctattatta 767

                                                                       
Query: 302 atggcttcaaatagtgttttgaacctcatatcacagcaatctgagtctttgtcttctatc 361
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 atgccttcaaatagtgttttgaacctcatatcacagcaatctgagtctttgtcttctatc 707

                                                                       
Query: 362 tcctacctttgtggacttttaaaataagacactggacaattcacagaatctagaataatc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tcctacctttgtggacttttaaaataagacactggacaattcacagaatctagaataatc 647

                                                                       
Query: 422 tcttttaatggcagctgttagcaatcttagtctggaaccccaaagtcctttgtagtgtta 481
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tcttttaatggtagctgttagcaatcttagtctggaaccccaaagtcctttgtagtgtta 587

                                                                       
Query: 482 tctaagatatccacatatccttagggccgaaacatgggtatctggtggagaattgctcta 541
           |||||||||||||||||| ||||| |  ||||||||||||| ||||||||||||||||||
Sbjct: 586 tctaagatatccacatattcttagagttgaaacatgggtatttggtggagaattgctcta 527

                                                                       
Query: 542 acaagtttattttaattgccaaatttaattattaatatatgaagtggatgtttttggata 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acaagtttattttaattgccaaatttaattattaatatatgaagtggatgtttttggata 467

                      
Query: 602 tgtcatgtggt 612
           |||||||||||
Sbjct: 466 tgtcatgtggt 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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