Query= MSMg01no146_d13.b1 MSMg01no146_d13.b1 CHROMAT_FILE:
MSMg01no146_d13.b1 PHD_FILE: MSMg01no146_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:44 2005
(782 letters)
>mm_chr17_91323322_91324504
Length = 1183
Score = 1460 bits (755), Expect = 0.0
Identities = 776/783 (99%), Gaps = 1/783 (0%)
Strand = Plus / Plus
Query: 1 agctaaatataaggaatgataaaaattcccccttttttcaggtgatttccccgaaatgcc 60
||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct: 201 agctaaatataaggaatgataaaaattcccctttttttcaggtgatttttctgaaatgcc 260
Query: 61 tttgtagctaagataaatgattataccattactgaactttcagatcagagatacctcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtagctaagataaatgattataccattactgaactttcagatcagagatacctcctg 320
Query: 121 aatgtagccccaaataaaggtcttcaagatgcttccacaatgttgaataactgagcaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtagccccaaataaaggtcttcaagatgcttccacaatgttgaataactgagcaaat 380
Query: 181 ctggtgcactttaaatctattgaggtttagagctgatctgtttcagagtcaccaagatca 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtgcgctttaaatctattgaggtttagagctgatctgtttcagagtcaccaagatca 440
Query: 241 gatttttcgcagaatgaaggtcaaatgtaggtttttt-ctcttacatcttgtagcttcac 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gatttttcgcagaatgaaggtcaaatgtaggtttttttctcttacatcttgtagcttcac 500
Query: 300 tgtgcattagctcacatctttctaaagatgaagctccaagcccccatatattttcggagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgcattagctcacatctttctaaagatgaagctccaagcccccatatattttcggagc 560
Query: 360 ttagtaaaatggttttgacacatttatatatatttaggatgtttttgagggtaaagccca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagtaaaatggttttgacacatttatatatatttaggatgtttttgagggtaaagccca 620
Query: 420 gactatcttgttcccttctctgactctgacattattatcgggagactaagaagaataaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactatcttgttcccttctctgactctgacattattatcgggagactaagaagaataaca 680
Query: 480 ctgggtagactgtttgccagactggataatgacctgatatattatagaaaccctagttag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgggtagactgtttgccagactggataatgacctgatatattatagaaaccctagttag 740
Query: 540 ggttagaaaaactgtagaatgccactgttcgatcaagactgtttgaagtatagtactgag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggttagaaaaactgtagaatgccactgttcgatcaagactgtttgaagtatagtactgag 800
Query: 600 ttaaaataaaagtcttgttagacctggtgatcctgtgataggagatttttgtctcattag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaaaataaaagtcttgttagacctggtgatcctgtgataggagatttttgtctcattag 860
Query: 660 caccagcacggaaaagttctgatccacctccggctgaaatgccaagcttgaagctgctgt 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 861 caccagcacggaaaagttctgatccacctccggctgaaatgccaagcttgaagctgttgt 920
Query: 720 gtgcagctggctctgcaggcttccaagtcagtgatcacggcatgtaaacagcaggattag 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtgcagctggctctgcaggcttccaagtcagtgatcacggcatgtaaacagcaggattag 980
Query: 780 tat 782
|||
Sbjct: 981 tat 983
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 782
Length of database: 1183
Length adjustment: 10
Effective length of query: 772
Effective length of database: 1173
Effective search space: 905556
Effective search space used: 905556
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_d13.g1 MSMg01no146_d13.g1 CHROMAT_FILE:
MSMg01no146_d13.g1 PHD_FILE: MSMg01no146_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:44 2005
(721 letters)
>mm_chr17_91408162_91409282
Length = 1121
Score = 1363 bits (705), Expect = 0.0
Identities = 717/721 (99%)
Strand = Plus / Minus
Query: 1 agcataatttaggacgacgcatagcgataaaaaggtttgcttgaaaaaaactcaccacta 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 agcataatttaggatgatgcatagcgataaaaaggtttgcttgaaaaaaactcaccacta 862
Query: 61 acccagagttacttttatagaagaaattaagacagcaattaaaaagtcattgttacatat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acccagagttccttttatagaagaaattaagacagcaattaaaaagtcattgttacatat 802
Query: 121 atatgaagcaaatatatgcatatgtgtctatgtatattcctactcatatacatgcatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atatgaagcaaatatatgcatatgtgtctatgtatattcctactcatatacatgcatgta 742
Query: 181 agcacttttccactcaaatatatattttcagactgcaggttcgacaatctttgctcatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcacttttccactcaaatatatattttcagactgcaggttcgacaatctttgctcatat 682
Query: 241 atatttgttgttttaatttttttgctcttcactatacttatactttcgaatgttcttaca 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatttgttgttgtaatttttttgctcttcactatacttatactttcgaatgttcttaca 622
Query: 301 atttcaacattctattttcaattagtagaactgtttttaattaataattattgtgtatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttcaacattctattttcaattagtagaactgtttttaattaataattattgtgtatgt 562
Query: 361 ccttttgttaatcagtccaaagctatacacaaacatatacacacacaaacacaaacatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttttgttaatcagtccaaagctatacacaaacatatacacacacaaacacaaacatgt 502
Query: 421 ctatgcaaaggttcttgaaaatacaatttgaataagaaagcattaattataatattatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatgcaaaggttcttgaaaatacaatttgaataagaaagcattaattataatattatca 442
Query: 481 tatcatggccaatataattaaatgagttttacctcaacatacagtgccttatgatttact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcatggccaatataattaaatgagttttacctcaacatacagtgccttatgatttact 382
Query: 541 aagtaagtggttttacacttctgtgatgaactacactgtatatggaatactttaaacatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtaagtggttttacacttctgtgatgaactacactgtatatggaatactttaaacatt 322
Query: 601 tggcaaatgaatcaagtagtaaatactaattatttttaaaaaggaacaggttctctttaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcaaatgaatcaagtagtaaatactaattatttttaaaaaggaacaggttctctttaa 262
Query: 661 atccacatgacagcacattatagatttcttctatctcccttttcctgttctttctgagcc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccacatgacagcacattatagatttcttctatctcccttttcctgttctttctgagcc 202
Query: 721 c 721
|
Sbjct: 201 c 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
