Query= MSMg01no146_j04.b1 MSMg01no146_j04.b1 CHROMAT_FILE:
MSMg01no146_j04.b1 PHD_FILE: MSMg01no146_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:30 2005
(667 letters)
>mm_chr17_17766657_17767723
Length = 1067
Score = 598 bits (309), Expect = e-175
Identities = 330/337 (97%)
Strand = Plus / Minus
Query: 1 tgacctctgtgaacttacctctgccaggcatcttcctcttcaattttgtgctatcctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgacctctgtgaacttacctctgccaggcatcttcctcttcaattttgtgctatcctttg 278
Query: 61 tgtccccactaatacaactgtatgtagccaaactgaatgccatctatataatcacccgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtccccactaatacaactgtatgtagccaaactgaatgccatctatataatcacccgta 218
Query: 121 atgaaaatgtatactcttttggtagcctatttcatgtgggagaggcattatctctctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atgaaaatgtatactcttttggtagcctatttcatgtgggagaggcattatctctctgca 158
Query: 181 cagcataactccatatacacttttttgatgtgtaaatatatacattttagaaagcttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cagcataactccatatacacttttttgatgtgtaaatatatacattttagaaagcttctt 98
Query: 241 ccctggttatttcgaatagagcatctttgttcatgaatgggcaagtacctctgtagtagg 300
||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||
Sbjct: 97 ccctggttatttcgaatagagcatcagtgaacatgaatgggtaagtatctctgtagtagg 38
Query: 301 atagtagagtctttcaggaatatgtccaggagtcata 337
||||||| |||||||||||||||||||||||||||||
Sbjct: 37 atagtagggtctttcaggaatatgtccaggagtcata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_j04.g1 MSMg01no146_j04.g1 CHROMAT_FILE:
MSMg01no146_j04.g1 PHD_FILE: MSMg01no146_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:30 2005
(631 letters)
>mm_chr17_17682909_17683937
Length = 1029
Score = 1178 bits (609), Expect = 0.0
Identities = 625/631 (99%), Gaps = 2/631 (0%)
Strand = Plus / Plus
Query: 1 attctacttgttggtatctattcttgaacatagtgggtcctgttttatgctatctattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctacttgttggtatctattcttgaacatagtgggtcctgttttatgctatctattca 260
Query: 61 atgtgtttatagctgatgtttctaactcattataaaatctctgaaagcaatgaacatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgtttatagctgatgtttctaactcattataaaatctctgaaagcaatgaacatgtt 320
Query: 121 taatattttccaaatcttcttaaactctacttgttctttcaacctgttctctgacttgtt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatattttccaaatcttctaaaactctacttgttctttcaacctgttctctgacttgtt 380
Query: 181 tcttactgcaataacatttaaaaacatgacaaccacaatgcaaatcaagcatactctacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttactgcaataacatttaaaaacatgacaaccacaatgcaaatcaagcatactctacc 440
Query: 241 ctgcaagttcaaagatgttattgattatgttggctcggtctttgtcactcagaacataag 300
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcaagttcaaagatgttattgatcaggttggctcggtctttgtcactcagaacataag 500
Query: 301 ggtttctttttaactgattgattagagctgtccagtcatcatgagcatagtgaacaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtttctttttaactgattgattagagctgtccagtcatcatgagcatagtgaacaatgt 560
Query: 361 aatagccagtcatgtttgaattgattttgacccactgcacttgttctgtaagattgatga 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 aatagccagtcatgtttgaattgactttgacccactgcacttgttctgtaagattgatga 620
Query: 421 catctgaaagagaagaaaaagtaaaacaccaggagagtagaaaatagagggctttttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catctgaaagagaagaaaaagtaaaacaccaggagagtagaaaatagagggctttttttt 680
Query: 481 ttttcaaagttaacaaagtatgttttcatatctatgattcttctaagaaactaagtagtt 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tt--caaagttaacaaagtatgttttcatatctatgattcttctaagaaactaagtagtt 738
Query: 541 atgtgctggtattgtacgtttcacattaatgaaggttgctactcattcaaacattattta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atgtgctggtattgtacgtttcacattaatgaaggttgctactcattcaaacattattta 798
Query: 601 ttcatcatacattactagctctaggattagg 631
|||||||||||||||||||||||||||||||
Sbjct: 799 ttcatcatacattactagctctaggattagg 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1029
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1019
Effective search space: 632799
Effective search space used: 632799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
