Query= MSMg01no146_m19.b1 MSMg01no146_m19.b1 CHROMAT_FILE:
MSMg01no146_m19.b1 PHD_FILE: MSMg01no146_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:00 2005
(536 letters)
>mm_chr17_26973275_26974210
Length = 936
Score = 859 bits (444), Expect = 0.0
Identities = 499/536 (93%), Gaps = 33/536 (6%)
Strand = Plus / Plus
Query: 1 ataggcctgatcccaagtagctggtggcgctggcctttaaacccaccagaggagaccaga 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 234 ataggcctgatcccaagtagctggtggcgcaggcctttaaacccaccagaggagaccaga 293
Query: 61 aagaaatcccagcagtggatttctgagttccagaacagccagggctacacagagaagccc 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagaaatcccagcggtggatttctgagttccagaacagccagggctacacagagaagccc 353
Query: 121 atctccaaaagcaagcaagcaagcaagcaagcaagcaaacaaaaagtgtctttttttttt 180
|||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 354 atctccaa----aagcaagcaagcaagcaagcaagcaaacaaaaagtgtc--------tt 401
Query: 181 ttttttttggatccctgaaagagaggagttgcaaaggagacatcacaaaaaaaaaaaaaa 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 402 ttttttttggatccctgaaagagaggagttgcaaaggagacatcac-----aaaaaaaaa 456
Query: 241 cccttcaaggctctggatattaatactctttcacacacacacacacacacacacacacac 300
|||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 cccttcaaggctctggatattaat--------------acacacacacacacacacacac 502
Query: 301 acacacccccagcccccctcgcccccgcactgaggggagggaggagagcaggggtgattt 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acaca--cccagcccccctcgcccccgcactgaggggagggaggagagcaggggtgattt 560
Query: 361 ataatattaagtgagaaaaaaacccttattctgttgttattggacacaaatatacaacga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 561 ataatattaagtgagaaaaaaacccttattctgttgttattggacacaaatatacgatga 620
Query: 421 aagagacagaggcagccctgagcctctgcaggacccagagagacaaaacctaacgttgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagacagaggcagccctgagcctctgcaggacccagagagacaaaacctaacgttgag 680
Query: 481 aatgtggtggtttccagaggattttccagactctgaattagaccgtcttgggcacc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgtggtggtttccagaggattttccagactctgaattagaccgtcttgggcacc 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_m19.g1 MSMg01no146_m19.g1 CHROMAT_FILE:
MSMg01no146_m19.g1 PHD_FILE: MSMg01no146_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:00 2005
(720 letters)
>mm_chr17_27051988_27053107
Length = 1120
Score = 1139 bits (589), Expect = 0.0
Identities = 589/589 (100%)
Strand = Plus / Minus
Query: 132 tcccagttcccagtactcagaatgcagaggcagacagatctcttgagttcaaggccaacc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 tcccagttcccagtactcagaatgcagaggcagacagatctcttgagttcaaggccaacc 1061
Query: 192 gggtctacaaagtaaattccagggcagccagggctttgtagagaatccctgtcttaaata 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 gggtctacaaagtaaattccagggcagccagggctttgtagagaatccctgtcttaaata 1001
Query: 252 aagaaatacacacatgcatacctgcatacatacatacatacatacatacatacatacata 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 aagaaatacacacatgcatacctgcatacatacatacatacatacatacatacatacata 941
Query: 312 catacacacatacatacataactgggtaaataaacagtatgtttcttgacaccaagttgt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 catacacacatacatacataactgggtaaataaacagtatgtttcttgacaccaagttgt 881
Query: 372 aaatctacagccctcttacttgagatgtttccaagtctacaaatgttaatgagggaacac 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 aaatctacagccctcttacttgagatgtttccaagtctacaaatgttaatgagggaacac 821
Query: 432 taaaaaatttctggttataattttacaaactggttataattttaaactagacagtatttc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 taaaaaatttctggttataattttacaaactggttataattttaaactagacagtatttc 761
Query: 492 cctagtgactttctagaaaaaaagcaaaagttttattgtgtgatagaatatgagtttgtc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cctagtgactttctagaaaaaaagcaaaagttttattgtgtgatagaatatgagtttgtc 701
Query: 552 ttctactgaaacctgttttgggagtttatctttcttggcatgaagcttgacagcaaggta 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttctactgaaacctgttttgggagtttatctttcttggcatgaagcttgacagcaaggta 641
Query: 612 aaccaacctgtgagattttacacatgggatggactgacctggcccctgcagccttgggat 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaccaacctgtgagattttacacatgggatggactgacctggcccctgcagccttgggat 581
Query: 672 aggagctggctcaggaaggactctgatgcagccagagctccaaggctat 720
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aggagctggctcaggaaggactctgatgcagccagagctccaaggctat 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space: 788100
Effective search space used: 788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
