BAC Information

Click to search

BAC

Clone NameMSMg01-148K16
Chromosome17 (Build37)
Map Location 21,910,972 - 21,911,258
singlet/doubletsinglet
Overlap genenone
Upstream geneV1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476
Downstream gene4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148K16.T7 (MSMg01no148_k16.b1)MSMg01-148K16.TJ (MSMg01no148_k16.g1)
ACCAG351596AG351597
length724733
length of high quality
(start - end)
655 (56 - 710)344 (73 - 416)
definitionCHROMAT_FILE: MSMg01no148_k16.b1 PHD_FILE: MSMg01no148_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:38 2005CHROMAT_FILE: MSMg01no148_k16.g1 PHD_FILE: MSMg01no148_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACGACTCCTATTTCCAGAAATCCGCGGAATTCTCACTGA
TGCTACCAAAGGAAATGCAAATCAAAACAACCGTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAGGATCAAAAATTCAGGTGACAGCAGATGTGGGCG
AGGATGTGGAGAAAGAGAAACACTCCTCCATTGCTGGTGGGATTGCAAGC
TGGTACAACCACTCTGGAAATCAGTCTGGCAGTTTCTCAGAAAACTGGAC
ATAGTACTACCACTAGATTCAGCAATACCTCTCCTGGGCATATACCCAGA
AGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTTCATAGCAG
CCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAACGCATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTC
AGCTATTAAAAACAATGAATTTATGAAATTCTTGGACAAATTGATGTATC
TGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGATGTCACTT
GATATGCACTCACTGATAAGTGGATATTAGTCCAGAAACCTAGAATACCC
AAGATACAACTTCCAAAACACAAGAAAATCAAGAAGGAAGGTCGACGCAT
GAATACTTCATTCTTCCCTAGAATATGGAATAAAATATCCGTGGAAGGAG
TTGCAGAGACAAAGTTTGGAGCTC
NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTATGTAGACCAGGCTGGCCTTGAAC
TCACAAAGATCTGCCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAAGTGT
TTGCCACCACCACTCAGCAAGAAATATAATTCTCAACTTAAAAAATTATA
AATATTCCATGAGAAAGCTCAGATCTAATAATCCTTGAAATAAGCCATAA
AACTATGTTGTTTTACATATCAACAAGATGACAGTGAAAATACAGCAGAC
TTCTAAGACCTCCATAATATCTAGGAAATATCTCAGATACCCTGATGATA
GCCTTCATAGCAACAAAAGATGCAGAGTAAGCTAGTGGGCAAGAAGTCAT
CAATAACCTTACCCAGACCCCCGCAGAGACAGCTCAGAGGTTAAGAATAT
GTTCCAGAGGTCCTGAGTTCAATTTCTAGCCACTACATAGTGGCTTCCAA
CCATCTATACTTCAAACCAATGCCCTCTTCTAGCATGCATGCAGAAAGAG
CACTCATATACATAAAATAAATAAATAAATAAATAAATCTTTAAAAACCT
TCCCAGATGTGGACCACCTGTGCCATATTACCAACCTACAAGAGATTCTA
TGTTAATTTACTGACATAGCACAGAGCTACCAGGAAATATCAGCAACCAG
CTGGTCAGTGCCCTTTTCTTACCCAGNATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_k16.g1 MSMg01no148_k16.g1 CHROMAT_FILE:
MSMg01no148_k16.g1 PHD_FILE: MSMg01no148_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:38 2005
         (344 letters)



>mm_chr17_21910696_21911439
          Length = 744

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactatgtagaccaggctggccttgaactcacaaagatctgcctgcctctgtctcccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cactatgtagaccaggctggccttgaactcacaaagatctgcctgcctctgtctcccaag 504

                                                                       
Query: 61  tgctgggattaaaagtgtttgccaccaccactcagcaagaaatataattctcaacttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgctgggattaaaagtgtttgccaccaccactcagcaagaaatataattctcaacttaaa 444

                                                                       
Query: 121 aaattataaatattccatgagaaagctcagatctaataatccttgaaataagccataaaa 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 aaattataaatattccatgagaaagctcagatctaataatccgtgaaataagccataaaa 384

                                                                       
Query: 181 ctatgttgttttacatatcaacaagatgacagtgaaaatacagcagacttctaagacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctatgttgttttacatatcaacaagatgacagtgaaaatacagcagacttctaagacctc 324

                                                          
Query: 241 cataatatctaggaaatatctcagataccctgatgatagccttcata 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cataatatctaggaaatatctcagataccctgatgatagccttcata 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)