BAC Information

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BAC

Clone NameMSMg01-148M17
Chromosome17 (Build37)
Map Location 23,331,195 - 23,331,783
singlet/doubletsinglet
Overlap genenone
Upstream geneEG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40
Downstream geneLOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148M17.T7 (MSMg01no148_m17.b1)MSMg01-148M17.TJ (MSMg01no148_m17.g1)
ACCAG351689AG351690
length735734
length of high quality
(start - end)		593 (40 - 632)632 (69 - 700)
definitionCHROMAT_FILE: MSMg01no148_m17.b1 PHD_FILE: MSMg01no148_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:48 2005CHROMAT_FILE: MSMg01no148_m17.g1 PHD_FILE: MSMg01no148_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATAAGTATCTCGAAACATCGAAAAAGTCCAAACTGAAGTGAAGCAAGAAA
TCAAAACTGCAATGTCTAATAATAACTCAGAACAGGTAGGAGACCGAATA
TCAGGCTTGAAGACAAAGTACGGGAGCTGGATGTCTCAGTCAAAGGAAAT
GATGAATTAAAAGAAAATACACAAGTAGCACTGTTTAAAGGCAGAAGTGA
AATTTAAACTGTGCATCCAACACTTATATGAAATAATTTAAATTTTAGAC
TTAACAACTCAATCTGGAGAGCTTTACTGGGAAGCTGGGTAATTATTTTC
ATAACTATGCAAATTGGAGTGACACTGAAAAGCCATCTGCATCCTTCCCT
CACAGACCTTCACTATTATCAGCCAAACATCTAAAATTTTAACTTGGGGG
AAGACATTTGAAGAACTCGGGATTTTGAAAGGAAATAGATGTCTCAGGAA
GTTGATGGTCAGTTAGCCCAACTAACAAACTAGAACTGAATTCATATCAT
ATTGCACACTACGGCTTTCTCCACATGATGGTGACTTTGCCGTTTTGCTA
ATTCTCAACAGGGGGAAGGAAGGAGGGAGGGTAGTGAGGGAGCTCTCTCT
CCCCTTTTCTTTCCTCTCCTTTTTTCCCCTTTTTCCCTCCCCCCCCTCTT
CTCCCTTTCCCCTTTTTTTTTCCTCTCTCTCTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCA
CCTGAAAAAATGTTCAGCATCCTTAATCATCAGAGAAATGTAAATCAAAA
GAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCTGGTGACAGCAGATGCTGGCAAGGATGTGGACAAAGAGGAACACTCCT
CCAATGTTGGTGGGATTGCAAGCTTCTACAACCACTCTGGAAATCAATCT
GGTGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCCGCAATA
CCTCTTCTGGGCATATATCCAGAAGATGTTCCAACTGATAAGAAGGACAC
ATTCTCCACTAGGCTCATAGCAGCCTTATTTTTAATAGCCAGAAGCTGGA
AAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAAAAAATGTGGTAC
ATTTACACAATGGAGTAATACTCAGCTATTACAAGGAATGAATTTATGAA
ATTCCTAGGCAAATGGTTGGACCTTGAGGGCATCATCCTGAGTGAGGTAA
CACAATCACAAATGAACTCAAATAATTTGTACTCACTGGTAAGTGGATAT
TAGCCCAGAAACTTAGAATTCCCAAGTTATAAGATACAATATACAATCTG
CAAAATACATGAAACTGAAGAAGAGCGAAGACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_m17.b1 MSMg01no148_m17.b1 CHROMAT_FILE:
MSMg01no148_m17.b1 PHD_FILE: MSMg01no148_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:48 2005
         (593 letters)



>mm_chr17_23330991_23331984
          Length = 994

 Score = 1085 bits (561), Expect = 0.0
 Identities = 582/589 (98%), Gaps = 1/589 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataagtatctcgaaacatcgaaaaagtccaaactgaagtgaagcaagaaatca 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataagtagctagaaacatcgaaaaagtccaaactgaagtgaagcaagaaatca 264

                                                                       
Query: 65  aaactgcaatgtctaataataactcagaacaggtaggagaccgaatatcaggcttgaaga 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 aaactgcaatgtctaataataactcagaacaggtaggagacagaatatcaggcttgaaga 324

                                                                       
Query: 125 caaagtacgggagctggatgtctcagtcaaaggaaatgatgaattaaaagaaaatacaca 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaagtacgggagcgggatgtctcagtcaaaggaaatgatgaattaaaagaaaatacaca 384

                                                                       
Query: 185 agtagcactgtttaaaggcagaagtgaaatttaaactgtgcatccaacacttatatgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtagcactgtttaaaggcagaagtgaaatttaaactgtgcatccaacacttatatgaaa 444

                                                                       
Query: 245 taatttaaattttagac-ttaacaactcaatctggagagctttactgggaagctgggtaa 303
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taatttaaattttagacattaacaactcaatctggagagctttactgggaagctgggtaa 504

                                                                       
Query: 304 ttattttcataactatgcaaattggagtgacactgaaaagccatctgcatccttccctca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 ttattttcataactatgcaaattggagtgacactgaaaagccatctgcatccttctctca 564

                                                                       
Query: 364 cagaccttcactattatcagccaaacatctaaaattttaacttgggggaagacatttgaa 423
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagaccttcactattaccagccaaacatctaaaattttaacttgggggaagacatttgaa 624

                                                                       
Query: 424 gaactcgggattttgaaaggaaatagatgtctcaggaagttgatggtcagttagcccaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaactcgggattttgaaaggaaatagatgtctcaggaagttgatggtcagttagcccaac 684

                                                                       
Query: 484 taacaaactagaactgaattcatatcatattgcacactacggctttctccacatgatggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taacaaactagaactgaattcatatcatattgcacactacggctttctccacatgatggt 744

                                                            
Query: 544 gactttgccgttttgctaattctcaacagggggaaggaaggagggaggg 592
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gactttgccgttttgctaattctcaacagggggaaggaaggagggaggg 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space:   573672
Effective search space used:   573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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