BAC Information

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BAC

Clone NameMSMg01-149H18
Chromosome17 (Build37)
Map Location 50,645,205 - 50,645,731
singlet/doubletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149H18.T7 (MSMg01no149_h18.b1)MSMg01-149H18.TJ (MSMg01no149_h18.g1)
ACCAG352190AG352191
length7151,264
length of high quality
(start - end)
527 (69 - 595)---
definitionCHROMAT_FILE: MSMg01no149_h18.b1 PHD_FILE: MSMg01no149_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:46 2005CHROMAT_FILE: MSMg01no149_h18.g1 PHD_FILE: MSMg01no149_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGATCCGCGGAAT
TCGGATCTTGCTTCCACTTCACAGGCTCTAATATTACGAGTCCAGATTTC
TCTGACTCACTGAGCACTTGGCCTCCACAAGCTTCTCTCCTCACTGTATT
CTGATAGTTTTTTTTATATCCCCCAAACCTACTCTCATCTTACCTCCTAT
GTTTCTCTGAAGATGCAGTTTAACTTCAGGCCTTCCTATTTGACTGCTCC
AGGAATGCTTACTGTGGGAGATAAGTGGAGCAGAAAGTATGGAACACTTA
ACGGAAGTACCAGATTACATCAAAGCACTGGTCCACAGAGGGAGCCCACC
GGCTTCCTGAGTCAATGCGTGCTTTTCGTTTTTTATCTACTATGCCCCTG
AAACACACACTGTATTTCTCATCATCAGCCTTAACAAGAAGAAACAGGCA
ATGTCCTTTTTCTTTCTGGACATTCATGTGCCAAAAGTTTTCATTTCCAT
AGTCTTACTCTCCTTTGGCACTAAAGGACCTTCAACCACGTTCCTTGGAT
CTGTGCTCCACAAGTCCAGATGGTTGCCAAGAAACTGTGCACTTATACAA
TTACATCAATGCCTTCTAGTCAAGAAGGAGCCACTTTGTGAATTCATTAA
ATTTTCTCAGCGGCTATTGAATTATGTAGCACTTTTAGGTGATCTATTTA
TTACTGGGGATTCAT
AACCCATTACCCTCTNTTCCTTCCTCCCCNCCACCCCTCCCTTCCCCAAC
ACTATACGNCCATCCCNCCCCTTTCCCGCCGTCTTNCTCGCCTCTTCGTT
CGCGTATCTTCCGCGCCGGTCCCGCATTTCGTGTGCCCCCCTGGTGCCGC
CTTNCCGCTTCCTGGCCACTTTGCGCTGTGTCGTCTTTCTTCAGCCGTGT
ACAGCGCCGCAGACCGCTAACAGCATGATCGTTTGCTGGTACATACGCGC
GTTATACGCATGCGCCGGAACCGTGCTCCGCGTTACCGTTATTGATTCGT
GAAAGCGCCGAATGTGTTCAGAAAGGAACTCCGCAGCNATTACGTCCGAA
TACGCACACCCGCTTGTGCTTGTAACCTATACCGCGCGTCCCTGTCTAGT
CCCACACCGAATAGATACACAATACATTATACCGCGCGACAATCGCGGAA
TTTATATCGAGACCCGGGTTATACTACATCGCTACACACAAAGTCGCAAC
CGAAGAACAGAGAAATTTAGAGAATTAAGCAGTGACACACATCGAATCCA
ACTGAAAGTCTACTTCTTAACATGTACACACAAACACCTCACAATTATCT
GCGGCATATATACGCAGTGGCGGGCCGCATTGCGAGAGACACGAGCGTTT
ATGATATATATACGATATAGATACCAATCGGTACAACGCCGATAAACATG
CGAGTCATAGCGCCAGGCGGAATACCCACGACACATCTGCCTTCGTCACA
ATTGTACACAACTCGCCGGGTTACGCCGCGTATATCGACGCACACCAATA
ATACGCATCCTCGATATAACCGCAAACGCGAATACATATATATGCGCGTA
CTGGATCGCGGTACAAAAACCTGATCACGGAATACGTCGCGACAACGATA
ACGTATCGCGCAACACGTACTATTATACGCTATACGCACGCGCACATATA
TAAATAAGTCACACACTCTGTTGTTGCCACCACTATATGCCGCGGCAACA
GCGGACGTATATCAATGACTGCACACCGAGCGCCACGTACGCGTCTCACT
NTACGACACATTCCTGAGCATATTTTATCGTTATTAGTATGCGCGCAACA
CCACATTTCGACGTGTCACATACATATTTGCATTACGCGCGCTCATACTA
GATACATATTATTTACCACCGCCGATATCGCGCCGTACATGTACACCCAC
CATTCGTAATATATTGATTCACCCACACAACCAGTCTAATACAGATTCCA
CGCGATATAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_h18.b1 MSMg01no149_h18.b1 CHROMAT_FILE:
MSMg01no149_h18.b1 PHD_FILE: MSMg01no149_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:46 2005
         (527 letters)



>mm_chr17_50645005_50645931
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacaggctctaatattacgagtccagatttctctgactcactgagcacttggcctccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tcacaggctctaatattacgagtccagatttctctgactcactgagcacttggcctccac 668

                                                                       
Query: 61  aagcttctctcctcactgtattctgatagttttttttatatcccccaaacctactctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aagcttctctcctcactgtattctgatagttttttttatatcccccaaacctactctcat 608

                                                                       
Query: 121 cttacctcctatgtttctctgaagatgcagtttaacttcaggccttcctatttgactgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttacctcctatgtttctctgaagatgcagtttaacttcaggccttcctatttgactgct 548

                                                                       
Query: 181 ccaggaatgcttactgtgggagataagtggagcagaaagtatggaacacttaacggaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccaggaatgcttactgtgggagataagtggagcagaaagtatggaacacttaacggaagt 488

                                                                       
Query: 241 accagattacatcaaagcactggtccacagagggagcccaccggcttcctgagtcaatgc 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tccagattacatcaaagcactggtccacagagggagcccaccggcttcctgagtcaatgc 428

                                                                       
Query: 301 gtgcttttcgttttttatctactatgcccctgaaacacacactgtatttctcatcatcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgcttttcgttttttatctactatgcccctgaaacacacactgtatttctcatcatcag 368

                                                                       
Query: 361 ccttaacaagaagaaacaggcaatgtcctttttctttctggacattcatgtgccaaaagt 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccttaacaacaagaaacaggcaatgtcctttttctttctggacattcatgtgccaaaagt 308

                                                                       
Query: 421 tttcatttccatagtcttactctcctttggcactaaaggaccttcaaccacgttccttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttcatttccatagtcttactctcctttggcactaaaggaccttcaaccacgttccttgg 248

                                                          
Query: 481 atctgtgctccacaagtccagatggttgccaagaaactgtgcactta 527
           ||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 247 atctgtgctccacaaatccagatggctgccaagaaactgtgcactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)